Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D23
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.2  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   6.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   6.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   6.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 273  NFYLFLCVPPNFEIVKICSATKKKVENHW 359
            ++ L + VPP+  ++ + S+T   +  HW
Sbjct: 1396 HYTLTVQVPPSAPVLYVTSSTSSSILLHW 1424


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 273  NFYLFLCVPPNFEIVKICSATKKKVENHW 359
            ++ L + VPP+  ++ + S+T   +  HW
Sbjct: 1392 HYTLTVQVPPSAPVLYVTSSTSSSILLHW 1420


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 68  IEIYSFEFTVLNIYVYTSDS 127
           +EI S+ +TVL++ +Y  ++
Sbjct: 177 VEIESYGYTVLDVVMYWKET 196


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 152 VCRQISKVCRQILQIYNNVNIIKLYH 229
           +   +S  C      YNN N  KLY+
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYY 328


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 279 KNYLLTTTHRINIFLF 232
           KNY    TH I + LF
Sbjct: 2   KNYSKNATHLITVLLF 17


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 318 KICSATKKKVENHW 359
           K+C   ++K+E +W
Sbjct: 55  KVCIVVRRKLEENW 68


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 279 KNYLLTTTHRINIFLF 232
           KNY    TH I + LF
Sbjct: 2   KNYSKNATHLITVLLF 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,947
Number of Sequences: 438
Number of extensions: 3127
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)