Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D22
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    28   0.81 
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   4.3  
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    25   7.5  
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    25   7.5  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   10.0 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   10.0 

>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 324 HRSYISNEWNDSENGTHDVIPSTSASLNRMVIDRQPLYKEPQ 449
           H +  S +  ++EN TH  IP+  A     V D  P  + PQ
Sbjct: 394 HANASSTQLRNTENITHPGIPNHFAKTTSSVFDEPPATRMPQ 435


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 336 ISNEWNDSENGTHDVIPSTSASLNR 410
           I N  ND  N T   +PSTSAS+++
Sbjct: 299 IRNSGNDLRNTTVITLPSTSASISQ 323


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 372 EYHFQNHS-IHLKYKIYG--LCHNIVSFAINHNCLHDILGNCYIGLRIGRNNC 223
           +Y+ Q  S +HL  ++ G  +  ++ + A  +NC   I   CY  L     NC
Sbjct: 58  DYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNC 110


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 372 EYHFQNHS-IHLKYKIYG--LCHNIVSFAINHNCLHDILGNCYIGLRIGRNNC 223
           +Y+ Q  S +HL  ++ G  +  ++ + A  +NC   I   CY  L     NC
Sbjct: 58  DYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNC 110


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 303 SQCYDTSHRSYISNEWNDSENGTHDVIPSTSASLNRMVI 419
           S C +   R  ++   ND ++G    +  T+A++ R++I
Sbjct: 384 SNCLEYQARRLLTRYRNDKDSGFVHTLNGTAAAIPRLII 422


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 336 YKIYGLCHNIVSFAINHNCLHDILGNCYIGLRIG 235
           ++ Y    N  S     +C+ +I G+ YIGL  G
Sbjct: 42  HRTYAFFENFASSFAACDCMSNIRGSFYIGLLTG 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,935
Number of Sequences: 5004
Number of extensions: 43783
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)