Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D22
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0673 - 26114861-26115003,26115141-26115290,26115372-261155...    29   3.3  
07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856...    27   7.7  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    27   7.7  
02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077     27   7.7  

>11_06_0673 -
           26114861-26115003,26115141-26115290,26115372-26115561,
           26115646-26115851,26117018-26117459
          Length = 376

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -1

Query: 402 DWQMLKV*HHEYHFQNHSIHLKYKIYGLCHNIVSFAINHNCLHDILGNCYIGLRIGRNNC 223
           DW+ +     E   + +     YK+ G   N ++  I  NC+HDI+G  + G    + N 
Sbjct: 155 DWKTIIEHARECDLKENHYLKAYKVVG---NQINDVIFFNCVHDIVGAEFNGKYTAKENF 211

Query: 222 SLFCSVII 199
           + +   I+
Sbjct: 212 NRYQKAIV 219


>07_01_1010 +
           8561656-8561764,8563666-8563919,8564309-8564331,
           8564926-8564962,8565503-8565985
          Length = 301

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 318 TSHRSYISNEWNDSENGTHDVIP---STSASLNRMVIDRQPLYKEPQFSGYNVRNRDTFF 488
           TSHRS+  N  ND  +GT  V P   +T    +R    R     +P+ +   +R   TFF
Sbjct: 60  TSHRSHNPNNPNDGGSGTPVVDPHNVATRGHHHRGAATRTAAGGDPRLAACMLRLGATFF 119


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 430  GCLSMTILLRLADVEGITS*VPFSESFHSFEI*DLWLVS*HCEFCHKP*LFA 275
            G L   +++R+ +V G+++  PFSESF  +      L S +   C  P  FA
Sbjct: 1129 GHLPSKLIVRILNVLGVSTKTPFSESFAQY------LASSNSSICPPPEYFA 1174


>02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077
          Length = 369

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 485 KCISITDIVTRKLRFLVKRLSVYD 414
           KC+++T+++  KL  L+KRL  +D
Sbjct: 78  KCLALTEMLAAKLDLLMKRLDDHD 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,782
Number of Sequences: 37544
Number of extensions: 228907
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)