Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D20
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 219 2e-58
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 192 4e-50
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 94 1e-20
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.028
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 29 0.34
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 0.80
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.4
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.2
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 26 4.2
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 4.2
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 25 5.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 5.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 7.4
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.8
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 9.8
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.8
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.8
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 219 bits (535), Expect = 2e-58
Identities = 109/146 (74%), Positives = 126/146 (86%)
Frame = +3
Query: 114 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 293
P+Y PFFGVMG +AI+F+S GAAYGTAK+G GI+AM V+RP+ I+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 294 YGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 473
YGLVV+VLI+G+L Q +LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQ
Sbjct: 67 YGLVVSVLISGNLKQ---ILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQ 123
Query: 474 PRLFVGMILILXFAEV*GLYGLIVAI 551
PRLFV MILIL FAEV GLYGLIVA+
Sbjct: 124 PRLFVAMILILIFAEVLGLYGLIVAL 149
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 192 bits (467), Expect = 4e-50
Identities = 90/146 (61%), Positives = 115/146 (78%)
Frame = +3
Query: 114 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 293
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE +MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 294 YGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 473
YGLV++VLIAG + P N+Y+L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+ +Q
Sbjct: 67 YGLVMSVLIAGDMS-PDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQ 125
Query: 474 PRLFVGMILILXFAEV*GLYGLIVAI 551
R+FV M+LIL FAEV GLYGLIV +
Sbjct: 126 DRIFVSMVLILIFAEVLGLYGLIVGL 151
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 94.3 bits (224), Expect = 1e-20
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 5/145 (3%)
Frame = +3
Query: 132 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 311
+G++G AS + F +GAA+G GT I AV P K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 312 VLIAGSLD--QPSNNYT---LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 476
++ + ++ P+ YT Y GF G+ VG L G +GI G + AQ
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164
Query: 477 RLFVGMILILXFAEV*GLYGLIVAI 551
LFV ++++ F V GL+GLIV +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGL 189
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.028
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -1
Query: 535 PYRPYTSAXMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAPK*MNP 365
P RP ++A ++ PT +VP P++P MP P+A P A AP NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.34
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 258 IIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGI 437
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVI-------AAMVGILYFGHWLVYKILILAFGFKIVT 245
Query: 438 VGDAGVRGT 464
GD V T
Sbjct: 246 SGDVCVSNT 254
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 0.80
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 117 LDFRPFFLNVGVFTGPKNSDDYLHTL 40
+DF P V TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 466 AVPRTPAS--PTMPMAKPAARPEKPTARPAP 380
A P P S P++PM PAA P P+A AP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 129 FFG-VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMR-PEQIMKSIIPVVMAGIIAIYGL 302
F+G ++G + F+ + + ++ G + I+ S+ P+V++ IIA +
Sbjct: 1439 FYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMSVAPLVLSAIIAFFFF 1498
Query: 303 VVAVLIAGSLDQPSNNYTLY 362
+ +++ L S Y +Y
Sbjct: 1499 CLGIMLRPILGDRSKTYGVY 1518
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 117 IYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIY 296
+YGPF+ A+ FS+ Y +G G + ++ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 297 GLVVAVLIAGSL 332
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -1
Query: 538 SPYRPYTSAXMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTAR 389
S Y+P +S+ + + + G A+P+ P P P +P R T +
Sbjct: 401 SSYKPSSSSKVSAKSVSRKPTGAPAIPKLP--PKHPSRQPTVRATPSTGK 448
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 300 LVVAVLIAGSLDQPSNNYTLYK--GFIHLGAGLAVGFSGLAAGFAIGIVG 443
L+ + ++ + +N +Y+ G + +A+G +GLA G IG+ G
Sbjct: 141 LITSSMLLDTFQTMESNQEMYELSGTRKMRRRIAMGLAGLAGGALIGLTG 190
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 25 VVSWSECVQIVIRVFGTCKYSHIQEKWPK 111
V S V I + F + SH+QEKW K
Sbjct: 96 VFSLIAVVLITVMGFAMLRVSHLQEKWRK 124
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 88 HIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVLPP 222
HI WP+ QS D E G L + A + + + ++ +L P
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTP 106
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -1
Query: 466 AVPRTPASPTMPMA----KPAARPEKPTARPAPK 377
+VP+ PA+P +P A +P A P P AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 129 KVHRLDFRPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTDK 10
KV +D + FL PKN +DY++ L + D+
Sbjct: 249 KVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDR 288
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 80 NTPTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCIWHSQVR 205
++PT + + W S+G VC H++ CC ++S+++
Sbjct: 32 DSPTTVHHDERKESWR---SHGFIVCLHIRCCICCKYNSKIK 70
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -1
Query: 259 MDFMICSGRITAMAAIPVPDLAVPYAAPREL 167
++ ++ +G ++ +P+ DLA Y A R++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDI 313
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 484 NNLGCWAVPRTPASPTMPMAKPAARPEKPTAR 389
+N+ V P +P M M PA P K AR
Sbjct: 256 SNMHIRYVSANPKTPVMYMVDPAYEPHKQIAR 287
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 240 QAASPPWRQYRCLTWL 193
Q ++PPW C +WL
Sbjct: 448 QGSAPPWHYIPCQSWL 463
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 451 PASPTMPMAKPAARPEKPTARP 386
PA P P+ P + P P+A P
Sbjct: 174 PAQPAAPVKSPPSAPSLPSAVP 195
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 56 SSEFLGPVNTPTFKKNG 106
SS +L P +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,439
Number of Sequences: 5004
Number of extensions: 59896
Number of successful extensions: 181
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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