Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D18
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 29 0.48
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 28 0.84
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 27 1.9
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 2.6
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 26 3.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 4.5
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 26 4.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 4.5
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 7.8
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 7.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.8
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 29.1 bits (62), Expect = 0.48
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 335 NEVLSNYMAVTPKRAK-IENEPATQNELCPSTYSPTVVSVKYASRNNMGTVVHSYGDEKL 511
++V S T + K I+N P+T ELC +++ + Y + + + +Y E++
Sbjct: 1933 DQVFSGSSVFTSQAVKYIQNSPSTNTELCQASFKFLASILPYENVKIKESTI-NYLLERV 1991
Query: 512 LQEIADPNGPNDMFNL 559
+I +P+ MF+L
Sbjct: 1992 GTDIQEPDRQGVMFSL 2007
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.84
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 428 YSPTVVSVKYASRNNMGTVVHSYGDEKLLQEIADPN 535
Y+P+V+ K A++ ++ YGDE + E+ N
Sbjct: 214 YAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMN 249
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 68 DVQKEVLRKCVSLCEEYDVDAESLIEQWIAFSLNNLNGASPNLENLDLFVRK 223
D+ +L C EE VDA + I+ W++ L++ N+ + F+RK
Sbjct: 148 DLTSSILDACD---EEILVDARNQIKNWLSSELSHSTSKYLNITTSNRFIRK 196
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 303 FTVDPFQHNQTMKSYQIIWLLHQRELKLKTNRLHKMNY 416
F F +N + + + WLLH L+T+R+ +Y
Sbjct: 603 FGPSAFHYNYNIGKFVVAWLLHWAPYILETDRVFLYHY 640
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 164 LNNLNGASPNLENLDLFVRKEFSKRTSRTNAPGKETTQMV 283
L+NL GA+ E+L+ F +KE K + + G +TT ++
Sbjct: 288 LSNL-GAASRKEHLNKFEKKEAKKDRKKKSKDGDQTTLLL 326
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 4.5
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = +2
Query: 167 NNLNGASPNL--ENLDLFVRK-EFSKRTSRTNA--PGKET--TQMVTGTCLTVYGGPVSA 325
NNL A PN+ EN V F + + NA P T +Q+ CLTV GP+S
Sbjct: 250 NNLLRAQPNVNCENFPTTVPNYPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLST 309
Query: 326 QS 331
S
Sbjct: 310 AS 311
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 320 SAQSDNEVLSNYMAVTPKRAKIENEPATQ-NELCPSTYSPTVVSVKYASR 466
+ Q D+E ++ +A KRA+ +N +T + L S Y PT ++ ++++
Sbjct: 205 NTQEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNYLPTNPTLTHSNK 254
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 4.5
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Frame = +2
Query: 125 DAESLIEQW---IAFSLNNLNGASPNLENLDLFVRKEFSKRTSRTNAPGKETTQMVTGTC 295
D+E LI W + + G N+ +L FS+ ++ + G + T
Sbjct: 524 DSEGLIHLWDIGTGRRIKTMRGHRGNIYSLS------FSRESTVLVSGGSDCTVRAWDVF 577
Query: 296 LTVYGGPVSAQSDNEVLSNYMAVTPKRAKIENEPATQNELCPSTYSPTVVSVKYASRN 469
T Y PVS+ V++ + A T ++ + + T + +V + RN
Sbjct: 578 KTNYNNPVSSSLTGSVVTPFSAKTSTFNEVNWSTSPDQMVALYTKQTPIFNVSFTRRN 635
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -3
Query: 567 DTVRLNISFGPL---GSAISCSNFSSPY 493
DT LN + GS+ +CSN SSP+
Sbjct: 383 DTTNLNTPISDIPSPGSSTTCSNLSSPH 410
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 489 IRMAMRSYYKKSQILTVQMICLI 557
+ + +R+ Y KSQ+L +QMI ++
Sbjct: 345 LAILLRNGYTKSQVLVLQMITMV 367
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 56 FLGIDVQKEVLRKCVSLCEEYDVDAE 133
F + + K++LRK VSL + +DAE
Sbjct: 542 FFVVSLYKKLLRKKVSLADMESIDAE 567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,575
Number of Sequences: 5004
Number of extensions: 50085
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -