Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D18
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0056 - 11936264-11939677 36 0.017
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 31 0.65
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 30 1.5
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 29 3.4
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638... 29 3.4
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 28 4.6
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 28 4.6
01_07_0114 + 41161923-41163251 28 4.6
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 27 8.0
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 27 8.0
03_06_0680 - 35497868-35497884,35498058-35501961 27 8.0
03_02_0090 - 5564326-5567280 27 8.0
02_04_0174 - 20607745-20608998 27 8.0
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +2
Query: 86 LRKCVSLCEEY----DVDAESLIEQWIAFSLNNLNGASPNL----ENLDLFVRKEF 229
L++C S C Y + DAE+L++ W+A L NG+ P + E D VR+ F
Sbjct: 568 LKRCFSFCSMYPKSHEFDAETLVDSWVAVGLVVSNGSVPAVDIGHEYFDQLVRRSF 623
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 257 PGKETTQMVTGTCLTVYGGPVSAQSDNEVLSNYMAVTPKRAKIENEPATQNELCP 421
P E T M + T L++ V E L + P +++EP QNE+ P
Sbjct: 893 PALEVTNMESDTVLSILPTTVLPTEGTEGLLQQPLLRPPSPVVQSEPCLQNEMAP 947
>10_08_0426 -
17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 443 VSVKYASRNNMGTVVHSYGDEKLLQE---IADPNGPNDMFN 556
VS S N +G ++H + DE+ ++E I +P+G N FN
Sbjct: 672 VSTDVHSSNEVGHILHKHKDEETVREALDILEPDGTNVNFN 712
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Frame = +2
Query: 86 LRKCVSLCE----EYDVDAESLIEQWIA 157
L++C S C Y+ DAE+L++ W+A
Sbjct: 704 LKRCFSFCSLYPRGYEFDAETLVDSWVA 731
>08_01_0718 -
6365506-6366047,6381623-6381937,6382857-6383082,
6383295-6383458,6383498-6383934,6384395-6384669
Length = 652
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 107 CEEYDVDAESLIEQWIAF-SLNNLNGASPNLENLDLFVRKEFSKRTSRTNAPGKETTQ 277
C + + DA + ++Q++ S + G SP++ L LF K NAP + T+
Sbjct: 46 CRKPNEDANAHLQQFLEICSTYTVKGVSPDIVRLRLFPFSLLGKAKKSPNAPSRPWTR 103
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 77 KEVLRKCVSLCEEYDVDAESLIEQWIA 157
K+ C C++Y+++ + LI+ WIA
Sbjct: 661 KQCFTFCAIFCKDYEMEKDMLIQLWIA 687
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 275 QMVTGTCLTVYGGPVSAQSDNEVLSNYMAVTPKRAKIENEPATQNELCPSTYS 433
Q V G T VS ++DN V + + + +RAK + LC ST S
Sbjct: 158 QKVLGNKWTEIAKVVSGRTDNAVKNRFSTLCKRRAKDDELFKENGSLCSSTSS 210
>01_07_0114 + 41161923-41163251
Length = 442
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 270 VSLPGALVRLVRLENSFLTNKSKFSKFGDAPLRL 169
+SLP L N F S+F+ FGDAP+ L
Sbjct: 187 LSLPSQLAAQRNFGNKFALCMSQFATFGDAPVYL 220
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
Frame = +2
Query: 86 LRKCVSLC----EEYDVDAESLIEQWIA 157
+++C + C ++Y++D E+LI+ W+A
Sbjct: 416 MKQCFAFCAIFPKDYEIDVETLIQLWLA 443
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 119 DVDAESLIEQWIAFSLNN--LNGASPNLENLDLFVRKEFSK 235
D+D + LI QWIA L N +G P + ++F+ S+
Sbjct: 378 DIDKDELIRQWIALDLINSSRHGTLPAFLHGEMFIEALVSR 418
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Frame = +2
Query: 86 LRKCVSLC----EEYDVDAESLIEQWIA 157
+R+C + C ++Y++D E LI+ W+A
Sbjct: 420 MRQCFAFCAIFPKDYEIDVEMLIQLWMA 447
>03_02_0090 - 5564326-5567280
Length = 984
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +2
Query: 50 FQFLGIDVQKEVLRKCVSLCEEYDVDAESLIEQWIAFSL 166
+ +L +E C E+Y ++ E L+E W+ L
Sbjct: 430 YDYLPTTTMQECFLTCCLWPEDYSIEREKLVECWLGLGL 468
>02_04_0174 - 20607745-20608998
Length = 417
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 314 PVSAQSDNEVLSNYMAVTPKRAKIENEPATQNELCPSTYSP 436
P+S + + ++ T RA IE+ AT N CP T SP
Sbjct: 25 PISLELMRDPVTVSTGQTYDRASIESWVATGNTTCPVTRSP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,089
Number of Sequences: 37544
Number of extensions: 288289
Number of successful extensions: 758
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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