Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D17
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   2.2  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.9  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   5.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.0  

>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +1

Query: 148 HICNLKPTTVTRHGKSNIFVHKDLQKSSQVFLRTDALKRALQPPYTGPYKVISRSDKTFQ 327
           H+   K +T    G +N  +  +  K ++V +R+D  +     P       ++ +DK++ 
Sbjct: 268 HVLEAKSSTSWLAGTTNTLIMLNQNKMAEVIVRSDTHQIEFVDPTIKNLTSLTYTDKSWM 327

Query: 328 IDIAGKI 348
            DI  ++
Sbjct: 328 EDIISRV 334


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 280 YTGPYKVISRSDKTFQIDIAGKIVTVSIDRLK-PAYLLS 393
           Y GP+       + F+  I G+++ +S DRL+ PAY L+
Sbjct: 328 YGGPHAGFFACSEEFKRKIPGRLIGLSKDRLENPAYRLA 366


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 268 LQPPYTGPYKVISRSDKTFQIDIAGKIV 351
           L+P  T  Y +I + D+TF++ I G +V
Sbjct: 196 LKPGITNLYTLIVKPDQTFEVRINGDVV 223


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 389 SASPRRCKEPRSLHTAHPTPPTSRDPVEESGSR 487
           +A PR+   P    T H    T R PV  S SR
Sbjct: 190 NAVPRKSSSPPLSSTKHAPQSTERRPVRRSESR 222


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 58  ETLKLPSDFFLASSVAEVTDYSDFLSRLRRHICNLKPTTVTRH 186
           E L +P D  +  SVAEV     + + +R   C LK  + + H
Sbjct: 61  ELLDIPKDKIIGHSVAEVLGTDGYNAFMRAVNCLLKDDSHSYH 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,958
Number of Sequences: 5004
Number of extensions: 51287
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)