Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D16
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.98 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.98 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 292 VGYSAGTVAVLNLSTSDRTYRP 227
           VGY    + V++  T D+ YRP
Sbjct: 90  VGYKGRALVVVSCVTKDQPYRP 111


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 292 VGYSAGTVAVLNLSTSDRTYRP 227
           VGY    + V++  T D+ YRP
Sbjct: 90  VGYKGRALVVVSCVTKDQPYRP 111


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +1

Query: 70  WNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQK 249
           WN HQ LQ Q+    + Q NE  +  +++V  ++    +    +++ +E ++      QK
Sbjct: 331 WNEHQPLQRQN-MDMVAQ-NEKTLQMIISVKIIQNLAYSGRMNRIHKNEYMLALSNRMQK 388

Query: 250 STGSE 264
              ++
Sbjct: 389 IVNND 393


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  WNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERI 180
           WN HQ LQ Q+    + Q +  R L+++    ++E +
Sbjct: 328 WNEHQSLQRQN-LEMVAQND--RTLQMIAGMKIKEEL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,248
Number of Sequences: 438
Number of extensions: 1704
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)