Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D15
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.5  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   3.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.4  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   4.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   5.8  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   5.8  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   7.7  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 448 DVNSSYQTGFYNTTPVDPLSPNF 516
           D  SS  T +Y+   VDP SPN+
Sbjct: 172 DSVSSVNTQYYSNIVVDPFSPNY 194


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 280 FHETDCEFFQDLVQWCSAPAKEEQVLTIDPPKK 378
           F++   EF +  VQ     +K+E+ +T+ PP+K
Sbjct: 294 FNQDGREFIRSSVQKLLGFSKDEKAITVFPPRK 326


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 49  NDSNTKRYGFSQTSHKTQSVLKVVEIDRLKPEKSQQVNGSIG 174
           NDS+ +  GFS+  ++  S+ +V+ + R K  ++ + N   G
Sbjct: 29  NDSDRQNSGFSRLWNRFPSLQRVLGLRRAKRHRNDEGNSENG 70


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 283  HETDCEFFQDLVQWCSAPAKEEQVLTIDPPKKNEDRTC 396
            HE+  EF  DLV+       E +++T+D    +ED +C
Sbjct: 1813 HESVSEFLSDLVETTMNDLSEARLITVD----DEDDSC 1846


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 394 MSYLHSFWEDQWSELVLPLRERSTTEPD 311
           +  L SFW+ +  E++LP  ++S T  D
Sbjct: 400 LDVLSSFWKQRLLEIILPHLKQSLTSED 427


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 298 EFFQDLVQWCSAPAKEEQVLTIDPPKKNEDRTCNNDTL 411
           EF  D V   + P KE Q+ ++D   K ED+  +ND +
Sbjct: 265 EFNNDSVVLNTTP-KEMQISSLDAVDKLEDKPVSNDNI 301


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 421 LSPQGWDAFDVNSSYQTGF 477
           L+P  WD+F  NSSY+  F
Sbjct: 121 LNPAPWDSFKHNSSYKFTF 139


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 421 LSPQGWDAFDVNSSYQTGFYNTTP 492
           L PQGWD++ + ++ +   +N TP
Sbjct: 187 LEPQGWDSY-LKAAKKISVFNQTP 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,491
Number of Sequences: 5004
Number of extensions: 45486
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)