Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D15
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 29 3.4
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 28 4.5
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 28 5.9
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 27 7.8
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 27 7.8
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 478 YNTTPVDPLSPNFEGFTPFNQYLT 549
+N PV+PLSP + +T ++ LT
Sbjct: 66 HNANPVEPLSPMYPNYTSYDPVLT 89
>07_03_0204 -
15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 162 RFDRSGYR--RMHRNDADVTDADDQLFRGIFERGALIRGHNVSRNGLRVLPRSGSVVLRS 335
R+ SG + R H +D+ ++ D+ G GH + G R + SVV+
Sbjct: 351 RYHYSGRKSSRKHSSDSKESEVLDEGSDGSSSERGSSHGHKSHKKGKRSGKKKPSVVVIK 410
Query: 336 RKGRTSSDH*SSQKE 380
TS H SS+ E
Sbjct: 411 NVNVTSKKHGSSESE 425
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 307 QDLVQWCSAPAKEEQVLTIDPPKKNEDRTCN 399
Q+ + + SAP EE VLT DP K N R C+
Sbjct: 1700 QERLPFVSAP--EEWVLTGDPDKDNATRACH 1728
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +3
Query: 72 WFFTNESQDSKCFESGRNRSFKAGKESAGERFDR---SGYRRMHRNDADVTDADDQLFRG 242
+ + +E + +R K + S ER +R GY+ + + D+ +
Sbjct: 47 YIYDDEGDEDDYDVRRESRVSKVPRRSPEERSERRLSDGYKDRDGDSSRRRREDNNDWDS 106
Query: 243 IFERGALIRGHNVSRNGLRVLPRSGSVVLRSRKGRTSSD 359
G+ GH+VSR+ R R+ S +R R+S+D
Sbjct: 107 SRRSGSRTSGHDVSRSKSRSSDRTSSDRADTRDSRSSAD 145
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 394 MSYLHSFWEDQWSELVLPLRERSTT 320
MS L +W+D W+ L+ L STT
Sbjct: 399 MSILEGYWQDTWNSLIHALPLFSTT 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,913
Number of Sequences: 37544
Number of extensions: 274071
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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