Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D15
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z36238-9|CAL63998.1|  335|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF443191-1|AAL60201.1|  285|Caenorhabditis elegans X-box binding...    29   2.3  
U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical p...    29   3.1  
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.3  
AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical ...    27   9.3  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    27   9.3  
AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 238 EGYLKEEPLFEDTMFHETDCEFFQDLVQWCS 330
           +G + E P F+ T+     CEF  +L QW S
Sbjct: 271 KGIVLETPFFKGTVIEPEACEFLVNLEQWKS 301


>Z36238-9|CAL63998.1|  335|Caenorhabditis elegans Hypothetical
           protein R74.3a protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 43  QSNDSNTKRYGFSQTSHKTQSVLKVVEIDRLKPEKSQQVNGSI 171
           Q +   T  YGF +  H     +    +D ++P  SQQ +G +
Sbjct: 185 QQHQQPTPSYGFQEEQHNQCGYVSNYHLDSMQPHGSQQEDGHL 227


>AF443191-1|AAL60201.1|  285|Caenorhabditis elegans X-box binding
           protein processedisoform protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 43  QSNDSNTKRYGFSQTSHKTQSVLKVVEIDRLKPEKSQQVNGSI 171
           Q +   T  YGF +  H     +    +D ++P  SQQ +G +
Sbjct: 185 QQHQQPTPSYGFQEEQHNQCGYVSNYHLDSMQPHGSQQEDGHL 227


>U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical
           protein C28C12.1 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 263 YSRTQCFTKRTASSSKIWFSGAPLPQRKNKF*PLILPKRMKI 388
           Y  T C  K+T+S S++  +G P P  +    PL L    K+
Sbjct: 17  YVLTMCIKKKTSSKSRLSPNGTPKPASQPALSPLDLTPAKKV 58


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 18  ESERRYRKSVQRFKHQKIWFFTNESQDSKCFESGRNRSFKAGKESAGER 164
           E+E R+R+     + Q +     E +D +CFE+GR  +   G+ +   R
Sbjct: 466 EAEIRHREMELAKRQQLMELRERELRDRECFENGRTHAGHTGQHNYDNR 514


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 18  ESERRYRKSVQRFKHQKIWFFTNESQDSKCFESGRNRSFKAGKESAGER 164
           E+E R+R+     + Q +     E +D +CFE+GR  +   G+ +   R
Sbjct: 466 EAEIRHREMELAKRQQLMELRERELRDRECFENGRTHAGHTGQHNYDNR 514


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 15  SESERRYRKSVQRFKHQKIWFFTNESQDSKCFESGRNRSFKAGKESAGERFDRSGYRRMH 194
           S  ER  R S+Q+   Q      +  + +   ES R  +    K++       +GY++ H
Sbjct: 133 SGRERNSRSSIQQALRQ------HSEERANSAESKRQSTLTGAKKTVSINEQITGYQKTH 186

Query: 195 RNDADVTDA 221
           RN + V +A
Sbjct: 187 RNSSQVFEA 195


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 15  SESERRYRKSVQRFKHQKIWFFTNESQDSKCFESGRNRSFKAGKESAGERFDRSGYRRMH 194
           S  ER  R S+Q+   Q      +  + +   ES R  +    K++       +GY++ H
Sbjct: 133 SGRERNSRSSIQQALRQ------HSEERANSAESKRQSTLTGAKKTVSINEQITGYQKTH 186

Query: 195 RNDADVTDA 221
           RN + V +A
Sbjct: 187 RNSSQVFEA 195


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 186   RMHRNDADVTDADDQLFRGIFERGALIRGHNVSRNGLRVLPRSGSVVLRSR 338
             RM+RND  V + D   F G F +G+     NV+ N +R L   G +V  ++
Sbjct: 12206 RMYRNDFPVANFDKMAFEG-FTKGS-EHSFNVTINDIRKLD-GGKLVFEAK 12253


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 186   RMHRNDADVTDADDQLFRGIFERGALIRGHNVSRNGLRVLPRSGSVVLRSR 338
             RM+RND  V + D   F G F +G+     NV+ N +R L   G +V  ++
Sbjct: 12206 RMYRNDFPVANFDKMAFEG-FTKGS-EHSFNVTINDIRKLD-GGKLVFEAK 12253


>AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 96  DSKCFESGRNRSFKAGKES 152
           DSK F+  RN S K+GK+S
Sbjct: 390 DSKKFDDSRNSSLKSGKDS 408


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 7   GTCPSRSDDIGNQSNDSNTKRYGFSQTSHKTQSVLKVVEIDRLKPE-KSQQVNGSIGVVT 183
           GTC S+S++    S D ++   GF    H     ++   I++L+   ++Q V     VV 
Sbjct: 184 GTCCSQSNEATGDSTDRSSTSAGFDVFQHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVK 243

Query: 184 DG 189
            G
Sbjct: 244 KG 245


>AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 96  DSKCFESGRNRSFKAGKES 152
           DSK F+  RN S K+GK+S
Sbjct: 390 DSKKFDDSRNSSLKSGKDS 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,143
Number of Sequences: 27780
Number of extensions: 253882
Number of successful extensions: 667
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)