Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D13
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    27   2.6  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    27   2.6  

>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 272 LNWRRYGCLVRETPGVNLVHVYDPDDIEA 358
           LN    G ++R+ P VNL H+Y PD + A
Sbjct: 317 LNQETRGLVLRQRP-VNLHHLYYPDSLPA 344


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 422 IKKPQVYNTGRLLATNGPEWWRLRSTFQ 505
           I  P+    G+LL      WW L+ TF+
Sbjct: 139 IYSPETEYEGKLLEEQKENWWPLKETFE 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,525
Number of Sequences: 5004
Number of extensions: 48100
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)