Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D13
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21321-2|AAG00050.1| 489|Caenorhabditis elegans Cytochrome p450... 54 1e-07
Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical pr... 30 1.3
AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear recep... 30 1.3
AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear recep... 30 1.3
AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear recep... 30 1.3
Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z83110-2|CAB05524.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z83110-1|CAB05523.2| 300|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U21321-2|AAG00050.1| 489|Caenorhabditis elegans Cytochrome p450
family protein 44A1 protein.
Length = 489
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +2
Query: 278 WRRYGCLVRETPGVN---LVHVYDPDDIEAVFRQDARYP-ARRSHVAMFDYRIKKPQVYN 445
+++YG +V+E G +VH++DP D++ V D + P YR K
Sbjct: 70 YKKYGKIVKENLGFGRKYVVHIFDPADVQTVLAADGKTPFIVPLQETTQKYREMKGMNPG 129
Query: 446 TGRLLATNGPEWWRLRSTFQKNFTSPHSVKAHVANTDVV 562
G L NGPEW+RLRS+ Q P SV+ ++ + +V
Sbjct: 130 LGNL---NGPEWYRLRSSVQHAMMRPQSVQTYLPFSQIV 165
>Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical
protein W01D2.2b protein.
Length = 415
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 PDDIEAVFRQDARYPARRSHVAMFDYRIKKPQVYNTGRLL--ATNGPEWWRL 490
P+ + + DA ++SH ++F IKK Q+ + R + T+ E+W+L
Sbjct: 116 PETLSISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKL 167
>Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical
protein W01D2.2a protein.
Length = 412
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 PDDIEAVFRQDARYPARRSHVAMFDYRIKKPQVYNTGRLL--ATNGPEWWRL 490
P+ + + DA ++SH ++F IKK Q+ + R + T+ E+W+L
Sbjct: 116 PETLSISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKL 167
>AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 PDDIEAVFRQDARYPARRSHVAMFDYRIKKPQVYNTGRLL--ATNGPEWWRL 490
P+ + + DA ++SH ++F IKK Q+ + R + T+ E+W+L
Sbjct: 122 PETLSISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKL 173
>AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 415
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 PDDIEAVFRQDARYPARRSHVAMFDYRIKKPQVYNTGRLL--ATNGPEWWRL 490
P+ + + DA ++SH ++F IKK Q+ + R + T+ E+W+L
Sbjct: 119 PETLSISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKL 170
>AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 PDDIEAVFRQDARYPARRSHVAMFDYRIKKPQVYNTGRLL--ATNGPEWWRL 490
P+ + + DA ++SH ++F IKK Q+ + R + T+ E+W+L
Sbjct: 119 PETLSISTQTDALKVKKKSHTSLFTLDIKKEQIIDNLRAIYARTDPEEFWKL 170
>Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical
protein R03G8.1 protein.
Length = 663
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 121 YTADFFCTFYKWNHAVLLIEYFVHFYKRL 35
+T D+FC +K N L E+ H YK L
Sbjct: 250 WTDDYFCNVFKDNETSLFDEFKTHGYKTL 278
>Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.4 protein.
Length = 358
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = -3
Query: 139 F*LIQLYTADFFCTFYKWNH------AVLLIEYFVHFYKRL 35
F + +Y F+C FYK H +L I F+HF+ L
Sbjct: 34 FVTLPVYAEAFYCVFYKCKHFSKKYVVLLQIHLFLHFFGEL 74
>Z83110-2|CAB05524.1| 299|Caenorhabditis elegans Hypothetical
protein F57C2.2 protein.
Length = 299
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 129 INQKRYKNESLMHSTIFPD*VYP 197
I YK+ +LM STI+PD V+P
Sbjct: 184 IKDVTYKDFALMLSTIYPDAVFP 206
>Z83110-1|CAB05523.2| 300|Caenorhabditis elegans Hypothetical
protein F57C2.1 protein.
Length = 300
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 129 INQKRYKNESLMHSTIFPD*VYP 197
I YK+ +LM STI+PD V+P
Sbjct: 185 IKDVTYKDFALMLSTIYPDAVFP 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,288
Number of Sequences: 27780
Number of extensions: 270649
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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