Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D13
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    44   1e-06
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.13 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.13 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.13 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +2

Query: 281 RRYGCLVRETPGVN--LVHVYDPDDIEAVFRQDARYPARRSHVAMFDYRIKKPQVYNTGR 454
           +RYG L +E    N  ++ V+   DIE + R+++RYP R     +  YR  +   Y    
Sbjct: 88  QRYGALCKEEALWNFPMISVFSRQDIETIIRRNSRYPLRPPQEVISHYRRTRRDRYTNLG 147

Query: 455 LLATNGPEWWRLRSTFQKNFTSPHSV 532
           L+   G  W  LR       T+  +V
Sbjct: 148 LVNEQGQTWHDLRVALTSELTAASTV 173


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 58  NIRLKEQHGSIYKMCKKSLRCTVESIKKGIRMSLSCI 168
           N RLKE + ++  +C+K   C    I  G   +L C+
Sbjct: 208 NRRLKETYSNMCALCEKPEVCDYPDIYSGYEGALRCL 244


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 58  NIRLKEQHGSIYKMCKKSLRCTVESIKKGIRMSLSCI 168
           N RLKE + ++  +C+K   C    I  G   +L C+
Sbjct: 208 NRRLKETYSNMCALCEKPEVCDYPDIYSGYEGALRCL 244


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 58  NIRLKEQHGSIYKMCKKSLRCTVESIKKGIRMSLSCI 168
           N RLKE + ++  +C+K   C    I  G   +L C+
Sbjct: 208 NRRLKETYSNMCALCEKPEVCDYPDIYSGYEGALRCL 244


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 118 TADFFCTFYKWNHAV 74
           TA+++   Y+WNH V
Sbjct: 5   TANYYGDVYQWNHTV 19


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 166 CMRDSFLYLF*LIQLYTADFFCTFY 92
           C+ +  +Y+F L+  Y    FC  +
Sbjct: 433 CITEGGMYVFQLLDSYAVSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 166 CMRDSFLYLF*LIQLYTADFFCTFY 92
           C+ +  +Y+F L+  Y    FC  +
Sbjct: 486 CITEGGMYVFQLLDSYAVSGFCLLF 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,618
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)