Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D12
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   157   4e-39
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   157   4e-39
Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    28   3.5  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    28   3.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  157 bits (381), Expect = 4e-39
 Identities = 76/135 (56%), Positives = 97/135 (71%), Gaps = 1/135 (0%)
 Frame = +2

Query: 23  RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
           R+ ++KDV+Q +  K++A  LKK GKVKVP+  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 203 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG-G 379
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 380 RILTTQGRRDLDRIA 424
           RIL+ QGR+DLDRIA
Sbjct: 122 RILSKQGRKDLDRIA 136


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  157 bits (381), Expect = 4e-39
 Identities = 76/135 (56%), Positives = 97/135 (71%), Gaps = 1/135 (0%)
 Frame = +2

Query: 23  RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
           R+ ++KDV+Q +  K++A  LKK GKVKVP+  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 203 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG-G 379
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 380 RILTTQGRRDLDRIA 424
           RIL+ QGR+DLDRIA
Sbjct: 122 RILSKQGRKDLDRIA 136


>Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical
           protein T05F1.5 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 194 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 75
           QH+    NQGHR P P +  +LS P P  +  SL     S R
Sbjct: 82  QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 64  QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 153
           +NCS +  E+DR S G  SYG  +   F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 64  QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 153
           +NCS +  E+DR S G  SYG  +   F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,381
Number of Sequences: 27780
Number of extensions: 217123
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)