Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D11
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 239 2e-64
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 238 4e-64
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.3
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.0
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 6.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 6.9
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 239 bits (586), Expect = 2e-64
Identities = 111/183 (60%), Positives = 132/183 (72%)
Frame = +1
Query: 22 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 201
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 202 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 381
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 382 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 561
V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180
Query: 562 SQT 570
+ +
Sbjct: 181 NNS 183
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 594 WLRRNTLQLRRKR 632
WLR NTL LRR R
Sbjct: 189 WLRHNTLSLRRYR 201
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 238 bits (583), Expect = 4e-64
Identities = 110/183 (60%), Positives = 132/183 (72%)
Frame = +1
Query: 22 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 201
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 202 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 381
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 382 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 561
V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180
Query: 562 SQT 570
+ +
Sbjct: 181 NNS 183
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 594 WLRRNTLQLRRKR 632
WLR NTL LRR R
Sbjct: 189 WLRHNTLSLRRYR 201
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 108 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 22
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 388 QDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHK 492
+ S KY E P H + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 126 TSQLAILPHSYTQEKSHNIAQLFPIQLL 43
+SQL L H+Y +EKS N L IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 305 LATCSLLLRSVLVAGVVVYACLIHTG 382
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -2
Query: 567 LREAMSLAETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSL 439
L E + T+ FPC T+HL + + + + +I N++
Sbjct: 520 LSEEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNNV 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,431
Number of Sequences: 5004
Number of extensions: 49901
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -