Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D11
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 223 7e-59
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 221 3e-58
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.004
04_03_0563 - 17195605-17196681 29 2.3
10_01_0255 + 2684534-2684601,2684662-2684772,2684853-2684934,268... 29 3.1
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 3.1
08_01_1024 - 10349061-10349200,10349373-10350040,10350478-103505... 29 4.1
09_04_0379 - 17094540-17094868,17095354-17095717 28 5.4
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 5.4
06_01_1010 + 7866158-7866661 28 5.4
05_07_0213 + 28443724-28443775,28443901-28444007,28444757-284456... 28 5.4
06_03_1126 + 27805982-27806475,27806617-27807202 28 7.1
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 28 7.1
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 7.1
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 27 9.4
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 9.4
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 223 bits (546), Expect = 7e-59
Identities = 106/191 (55%), Positives = 130/191 (68%), Gaps = 1/191 (0%)
Frame = +1
Query: 22 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 201
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 202 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 381
++R+ YGKPK G+ QLK RN +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 382 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHR 558
V +DS+YKYFE+IL+D +H AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 559 FSQTNGGSRRA 591
+ SRRA
Sbjct: 181 HHKAR-PSRRA 190
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 221 bits (541), Expect = 3e-58
Identities = 105/190 (55%), Positives = 129/190 (67%), Gaps = 1/190 (0%)
Frame = +1
Query: 25 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVI 204
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV+
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 205 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWV 384
+R+ YGKPK G+ QLK RN +S+AEE NSYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 385 AQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRF 561
+DS+YKYFE+IL+D +H AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 562 SQTNGGSRRA 591
+ SRRA
Sbjct: 287 HKAR-PSRRA 295
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.1 bits (67), Expect(2) = 0.004
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 409 FEVILIDPSHKAIRRDPK 462
FE+IL+D +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 26.6 bits (56), Expect(2) = 0.004
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 181 RAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRN 312
R+ GYV+ Y KPK G+ QLK RN
Sbjct: 249 RSGTGYVVLPCPSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRN 292
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 125 VCTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAV 235
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>10_01_0255 +
2684534-2684601,2684662-2684772,2684853-2684934,
2685004-2685088,2685195-2685358
Length = 169
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 415 VILIDPSHKAIRRDPKINWIVNAVHK-HREMRGLTSAGKSSRGLGKGH--RFSQTNGGSR 585
V+++DP+H A + + ++N HK +++ G S+ L K F + +
Sbjct: 38 VVVLDPAHYAEKTFTEFLVLLNLAHKYYKDQSGRVKDASKSKLLVKTRWPNFQHSVASNH 97
Query: 586 RAAGYVATPC 615
+A YV T C
Sbjct: 98 QALTYVDTTC 107
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 309 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 148
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>08_01_1024 -
10349061-10349200,10349373-10350040,10350478-10350591,
10351956-10352032
Length = 332
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 515 RPQGKALVVSARDIASLKPMEVPVARLVTSQHLATA 622
+P GK ++V + KPME+P LV S+H TA
Sbjct: 262 KPNGKMILVGLPE----KPMEIPPFALVASKHGVTA 293
>09_04_0379 - 17094540-17094868,17095354-17095717
Length = 230
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 462 DQLDRECGTQTSRDARSDVRREKLSWSRQGTSLLSNQWRFPSRGWLRRNTLQLRRK 629
D+L R G T+ DA + + + +W+ + + + WR RG +R LQ+ K
Sbjct: 32 DELQRGVGVWTAEDAAAGDKLRRGAWAVEDVATGNELWRSVRRG--QRRALQVGDK 85
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 462 DQLDRECGTQTSRDARSDVRREKLSWSRQGTSLLSNQWRFPS 587
+++D + T +DA+ R K W G +++ + W P+
Sbjct: 301 NEIDGKYLDSTEKDAKKQFDRFKKDWDEYGVTIMCDSWTGPT 342
>06_01_1010 + 7866158-7866661
Length = 167
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 496 REMRGLTSAGKSSRGLGKGHRFSQTNGGSRR 588
R+ G+ G + G GKG R+ +GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>05_07_0213 +
28443724-28443775,28443901-28444007,28444757-28445644,
28445760-28445762,28446006-28446398
Length = 480
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 604 RRNQPRDGN--LHWFERSDVPCRDHESFSLRTSDRASRDVCVP 482
RR Q R N + W +R PC+ +S +++T R++ C+P
Sbjct: 10 RRRQIRAQNELIRWCKRKGSPCQHGDSRAVKTMRRSTPYPCLP 52
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 487 HKHREMRGLTSAGKSSRGLGKGHRFSQTNGGSRRAAGYVAT 609
H HR G + GH F +T G RRA AT
Sbjct: 231 HHHRGGGGFCCFTSNPETTSNGHSFRRTRAGGRRARSPAAT 271
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 514 TSAGKSSRGLGKGHRFSQTNGGSRRAAG 597
+S G+SS G G G+R S +GG+ + G
Sbjct: 241 SSNGRSSHGSGGGYRSSYRSGGAAASGG 268
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 294 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 145
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 291 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 133
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 291 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 133
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,523
Number of Sequences: 37544
Number of extensions: 381763
Number of successful extensions: 1319
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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