Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D10
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 211 6e-56
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 121 8e-29
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 117 9e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 108 6e-25
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 28 0.99
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 26 3.0
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 4.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 7.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 9.2
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.2
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 9.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 211 bits (515), Expect = 6e-56
Identities = 93/133 (69%), Positives = 111/133 (83%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTGDLQLERISVYYNEASVATAE 309
MREIVH+QAGQCGNQ+GA FW I++EHG+D G+Y GT + Q ER++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 489
GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 490 AVLDVVRKECENC 528
AVLDVVR+E E C
Sbjct: 115 AVLDVVRREAEAC 127
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 121 bits (291), Expect = 8e-29
Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTGDLQLERISVYYNEA-SVATA 306
MRE++ + GQ G QIG WE+ EHGI P G T + ++ + + Y N+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58
Query: 307 ESG-GKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
E+G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 484 VDAVLDVVRKECENC 528
+D+VL+ +R+ +NC
Sbjct: 119 IDSVLERIRRMADNC 133
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 117 bits (282), Expect = 9e-28
Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTGDLQLER--ISVYYNEASVAT 303
MREI+ + GQ G QIG WE+ EHGI P G Q S +++E
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58
Query: 304 AESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G EL
Sbjct: 59 ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
Query: 484 VDAVLDVVRKECENC 528
VD V D +R+ +NC
Sbjct: 115 VDEVTDKIRRIADNC 129
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 108 bits (259), Expect = 6e-25
Identities = 51/132 (38%), Positives = 82/132 (62%), Gaps = 2/132 (1%)
Frame = +1
Query: 133 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTGDLQLERISVYYNEASVATAES 312
REI+ LQAGQCGNQIG++FW+ + EHGI P G ++R V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56
Query: 313 GGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELV 486
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G Y+ +
Sbjct: 57 DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIF 115
Query: 487 DAVLDVVRKECE 522
+ ++D++ +E +
Sbjct: 116 EDIMDMIDREAD 127
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.9 bits (59), Expect = 0.99
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 451 AKGHYTEGAELVDAVLDVVRKECEN 525
A+GH G ELV A D +RK+ EN
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSEN 207
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 525 VLALFANYVEHGIDEFGAFCVVTFSPVVACA 433
V LF Y+ H D F FC V PV++ A
Sbjct: 90 VYELFT-YLNHFYDVFATFCTVKTCPVMSAA 119
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 169 NQIGAKFWEIISEEHGIDPTGVYRGTGDLQLERI 270
N++G E+++E+ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 382 GGYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 483
G YG +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 245 PAIYNSRESPFIIMRPLLRRRRAVASTCPAPYSSTSNQGPWTPSAP 382
P + RE + P+L + + + P SST++ TPS P
Sbjct: 325 PLLAKKREGSPSLPIPILPKMKDTSIPAAEPASSTTSARDQTPSTP 370
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 525 VLALFANYVEHGIDEFGAFCVVTF 454
+L + ++YV + +E GAFCV T+
Sbjct: 583 LLQVISSYVTNCREEQGAFCVSTY 606
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 241 GTGDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 354
G+ D+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,545
Number of Sequences: 5004
Number of extensions: 28942
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -