Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D09
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   138   4e-34
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   138   4e-34
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.14 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   0.98 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   2.3  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   5.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.2  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    24   6.9  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  138 bits (333), Expect = 4e-34
 Identities = 64/79 (81%), Positives = 71/79 (89%)
 Frame = +3

Query: 9   AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
           AIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVK
Sbjct: 65  AIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVK 124

Query: 189 VANVSLLALYKEKKERPRS 245
           VA V L AL+ EKKE+PR+
Sbjct: 125 VAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  138 bits (333), Expect = 4e-34
 Identities = 64/79 (81%), Positives = 71/79 (89%)
 Frame = +3

Query: 9   AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
           AIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVK
Sbjct: 65  AIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVK 124

Query: 189 VANVSLLALYKEKKERPRS 245
           VA V L AL+ EKKE+PR+
Sbjct: 125 VAGVGLSALFHEKKEKPRA 143


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.14
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 223  SLYRARSDTFATLTTLNLTPGMSPTAWP 140
            S Y+ + DT+AT  TLN      PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -1

Query: 223 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 95
           ++Y + + +F   T ++++ G S     L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 360  VVNKFLLCSQFTHYKMYTYKQ 298
            +VNK L+C +FT  K Y Y+Q
Sbjct: 1259 LVNKMLICPEFTKQKKY-YEQ 1278


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 72  PRDGCLNHIEENDEVLVAGFGRKGHAVG 155
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 17/86 (19%), Positives = 46/86 (53%)
 Frame = -1

Query: 292 LPAAAAGHSLITM*TYDLGLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNT 113
           +P +++     ++ T   G+S  S+      TF++++++  +   SP++  L  + ++ +
Sbjct: 545 IPTSSSSDFSSSITTISSGISSSSI----PSTFSSVSSILSSSTSSPSSTSLSISSSSTS 600

Query: 112 SSFSSMWLRQPSRGTNAVTFLPFLMS 35
           S+FSS     PS  +++++    ++S
Sbjct: 601 STFSSASTSSPSSISSSISSSSTILS 626


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 320 IKCTLINKTPPGGGSGSLTYHNV 252
           I  T I K+    G GS+TYH V
Sbjct: 387 ISATSIPKSQAAYGHGSVTYHEV 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,790
Number of Sequences: 5004
Number of extensions: 29783
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)