Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D09
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 149 5e-37
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 149 5e-37
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 62 1e-10
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 3e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.40
04_03_0232 - 13049649-13052807 29 1.6
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 4.9
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 6.5
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 6.5
06_03_1146 - 28004896-28005554,28005664-28005844 27 6.5
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044 26 8.6
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 149 bits (362), Expect = 5e-37
Identities = 68/79 (86%), Positives = 74/79 (93%)
Frame = +3
Query: 9 AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
AIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 189 VANVSLLALYKEKKERPRS 245
V+ VSLLAL+KEKKE+PRS
Sbjct: 124 VSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 149 bits (362), Expect = 5e-37
Identities = 68/79 (86%), Positives = 74/79 (93%)
Frame = +3
Query: 9 AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
AIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVK
Sbjct: 234 AIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 293
Query: 189 VANVSLLALYKEKKERPRS 245
V+ VSLLAL+KEKKE+PRS
Sbjct: 294 VSGVSLLALFKEKKEKPRS 312
Score = 146 bits (353), Expect = 7e-36
Identities = 66/77 (85%), Positives = 72/77 (93%)
Frame = +3
Query: 9 AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
AIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 189 VANVSLLALYKEKKERP 239
V+ VSLLAL+KEKKE+P
Sbjct: 124 VSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 62.1 bits (144), Expect = 1e-10
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = +3
Query: 9 AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 128
AI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 135 AICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 108 DEVLVAGFGRKGHAVGDIPGVRFKVVK 188
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.40
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 190 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 59
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -2
Query: 294 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 208
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 184 TTLNLTPGMSPTAWPLRPNPATNTSS 107
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 185 NHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHECCHFLAVLNELY 30
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 26.6 bits (56), Expect = 6.5
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 238 GLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNA- 62
GLS F Y +S +F +L +P + NP + W R+ S + A
Sbjct: 112 GLSNF--YAGKSKSFTSLAEATASPAAAANELAKPENPFNKRRRILATWSRRASCSSLAT 169
Query: 61 VTFLPFLMS 35
T+LP L++
Sbjct: 170 ATYLPPLLA 178
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 169 TPGMSPTAWPLRPNPATNTSSFSS 98
TP SP+ P+ P PA TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
Length = 578
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 45 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGH-AVGDIPGVRF 176
N KK + R+G L+++ N+E + + F R G A+ D+ R+
Sbjct: 471 NTKKDVMVLQREGILDNLLSNEEEVASFFNRLGRCALVDVSNHRY 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,193,994
Number of Sequences: 37544
Number of extensions: 228922
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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