Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D09
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   149   5e-37
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   3.4  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   3.4  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    26   7.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  149 bits (362), Expect = 5e-37
 Identities = 68/79 (86%), Positives = 74/79 (93%)
 Frame = +3

Query: 9   AIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 188
           AIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VK
Sbjct: 65  AIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 124

Query: 189 VANVSLLALYKEKKERPRS 245
           VAN SL+AL+K KKERPRS
Sbjct: 125 VANTSLIALFKGKKERPRS 143


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 60  TAFVPRDGCLNHIEEN 107
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 203 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 66
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 203 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 66
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 84  CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 191
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


>AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical
           protein R148.2 protein.
          Length = 95

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 96  IEENDEVLVAGFGRKGHAVGDIPGVRF----KVVKVANVSLLALYKEKKERPR 242
           +E+N   +++  G  G  V D  GVR     K+  +ANV  L +   K   P+
Sbjct: 5   LEQNVTAMMSSTGASGITVADSEGVRLHSAGKITDMANVGSLMIADAKNMFPK 57


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 139 LRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHL 17
           L+P+ + NTSS +   LR   +G N    LP L     T L
Sbjct: 216 LKPHLSPNTSSATRAMLRTLIKGLNYQILLPLLSYIPNTSL 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,098,403
Number of Sequences: 27780
Number of extensions: 184175
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)