Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D08
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   244   1e-65
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   243   2e-65
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    31   0.20 
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    29   0.45 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.79 
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   1.8  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.4  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   3.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   4.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.4  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.4  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   9.7  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  244 bits (596), Expect = 1e-65
 Identities = 121/205 (59%), Positives = 149/205 (72%)
 Frame = +1

Query: 19  GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
           GI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRLD
Sbjct: 2   GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLD 61

Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
           +GNF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +
Sbjct: 62  SGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILM 121

Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
           G  KG K T          +S+   +K+ +R   SKV+  LE QF  GRL A V+SRPGQ
Sbjct: 122 G-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQ 175

Query: 559 CGRADGYILEGKELEFYLRKIKSKR 633
            GR DGYILEG+EL FYLR++  K+
Sbjct: 176 SGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  243 bits (594), Expect = 2e-65
 Identities = 121/205 (59%), Positives = 149/205 (72%)
 Frame = +1

Query: 19  GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
           GI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRLD
Sbjct: 2   GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLD 61

Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
           +GNF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +
Sbjct: 62  SGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILM 121

Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
           G  KG K T          +S+   +K+ +R   SKV+  LE QF  GRL A V+SRPGQ
Sbjct: 122 G-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQ 175

Query: 559 CGRADGYILEGKELEFYLRKIKSKR 633
            GR DGYILEG+EL FYLR++  K+
Sbjct: 176 SGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 28   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 201
            RD  +K +  G       K+ +   EL    +N  +  Q+  L+ S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 202  GNFAWGSECSTRKTRI 249
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 373 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGL 501
           PL R+K  +LT  E  +  +  S  T+KK+  + + SK   G+
Sbjct: 569 PLSRRKARQLTALELGVSPEALSSATSKKHNKKNKRSKQRSGV 611


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 319 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 486
           V  DA   ++  E   ++   +KK +KL EA+     K++ +K  KK+   +R S+
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 118 WQPGDLTHTSSSYEWAHVC 62
           W PG      SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +1

Query: 109 PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
           P  NT + PQ     RSR   T  R+L   +G  +  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 289 RTKTLVKNAIVVVDATPFRQWYE 357
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 321 DNSILYQGFGTHQFIVRGIINNI 253
           +NS+ +Q F +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
 Frame = +1

Query: 31   DHWHKRRATGGKRAPIRKKRKY---ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 201
            D W   +A G   +PIR+ ++Y   +L  P    K      H    R    K R + +  
Sbjct: 758  DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKF-RDNYHKQNKRNREAKERGIGIKV 816

Query: 202  GNFAWGSECSTRKTRIIDVVYNASNN 279
             N    S    RK R +     A NN
Sbjct: 817  -NSELKSAVEIRKARELKEKRLAKNN 841


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 357 FIPLPERCGIHHDNSILYQ 301
           F+P PE C I+H+  I  Q
Sbjct: 477 FLPAPEECNIYHNEHIQVQ 495


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 414  LSLSELGTFLPSEW 373
            LSL+E GTFL  EW
Sbjct: 1554 LSLNECGTFLQKEW 1567


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 214 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 387
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 388 K 390
           +
Sbjct: 310 Q 310


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 364 YLLPLGRKKGAKLTE 408
           Y+LPLGRK   K TE
Sbjct: 492 YILPLGRKTARKCTE 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,389
Number of Sequences: 5004
Number of extensions: 66377
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)