Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D08
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 271 4e-73
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 256 1e-68
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 1.9
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 2.5
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 2.5
02_04_0094 + 19664434-19665078 29 2.5
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 3.3
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 3.3
06_03_1165 - 28106604-28106915 29 4.4
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 4.4
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 5.8
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 28 5.8
10_01_0049 - 668482-669283,669596-670131,670235-670452,670554-67... 28 7.6
06_01_0913 - 7042230-7043332,7043420-7043621 28 7.6
05_07_0165 + 28107093-28108457 28 7.6
02_02_0207 - 7845072-7845102,7845235-7845341,7845444-7845521,784... 28 7.6
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 271 bits (664), Expect = 4e-73
Identities = 134/216 (62%), Positives = 162/216 (75%), Gaps = 9/216 (4%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRL 195
GISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRL
Sbjct: 2 GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRL 61
Query: 196 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 375
DTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 62 DTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVD 121
Query: 376 LGRKK--------GAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLL 531
+GRKK A+ E E A K+S +K RQ+ ++ +EEQF +GRLL
Sbjct: 122 IGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLL 181
Query: 532 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 639
AC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 182 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 256 bits (627), Expect = 1e-68
Identities = 134/233 (57%), Positives = 162/233 (69%), Gaps = 26/233 (11%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRL 195
GISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRL
Sbjct: 2 GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRL 61
Query: 196 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 375
DTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 62 DTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVD 121
Query: 376 LGRKKGA-------------------------KLTEAEEAIINKKRSQKTAKKYLSRQRL 480
+GRKK A K +AE K+S +K RQ+
Sbjct: 122 IGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQG 181
Query: 481 SKVEGGLEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 639
++ +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 182 RTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 88 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 222
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 486 GRGWSGGAIPHWTAVS 533
G GW GG+ HW++VS
Sbjct: 65 GNGWQGGSTDHWSSVS 80
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 239 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 120
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>02_04_0094 + 19664434-19665078
Length = 214
Score = 29.5 bits (63), Expect = 2.5
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = +3
Query: 318 CRGGCHTFQAVV*KPLPAATRK---EERCQAH*G*GSHHKQKTQSKDSEEVPEQAAPVQG 488
C GG T +AVV LPAA RK E + G + + + + D+ EV E +P
Sbjct: 107 CAGGGGTAKAVVIAGLPAAARKASREHERRRRLG-RARARARVFAGDAVEVAEPGSPKV- 164
Query: 489 RGWSGGAIPHWTAVSMCGESARSVRSRRW 575
GG A C +A + RRW
Sbjct: 165 -SCLGGVRSRARAQQPCCPAAAAAGRRRW 192
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 43 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 177
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 43 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 192
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 43 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 177
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 142 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 321
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 322 V 324
V
Sbjct: 436 V 436
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 450 SEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARSVRS 566
+++V +A PV +GGA + + CG +ARS RS
Sbjct: 48 AKQVTGRAVPVSLSSQTGGAAASSSPAAACGRAARSKRS 86
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 118 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 26
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 511 FHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 639
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 426 KQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARSVRSRRWLHFGR*RAGV 605
K +T+ KD PE A G G GG I + +A S ++ S L G
Sbjct: 192 KTRTKEKDKAPAPEAAHNDDGGGGGGGGIDNVSAASHSHREEQAQASASGLTSDGLEEGP 251
Query: 606 LPKEDQIQEGKV 641
L +++ G V
Sbjct: 252 LGLSEEMVSGPV 263
>10_01_0049 -
668482-669283,669596-670131,670235-670452,670554-670653,
670706-670855
Length = 601
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 487 VEGGLEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSK 630
V+G + HTG+ AC + G+ A Y G L YL K++ +
Sbjct: 63 VKGNPASKTHTGKWKACYSILGGEFCGALAYYAVGTNLVSYLTKVQGQ 110
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 203 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 93
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>05_07_0165 + 28107093-28108457
Length = 454
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 517 CGIAPPDHPLPWTGAACS 464
C +PPD+ LPW AA S
Sbjct: 248 CTYSPPDYGLPWADAAVS 265
>02_02_0207 -
7845072-7845102,7845235-7845341,7845444-7845521,
7845966-7846169,7846389-7846445,7846513-7846578,
7847976-7848020,7848129-7848170,7848563-7848649,
7848830-7848919,7849226-7849431,7849565-7849604
Length = 350
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 450 SEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARSVRSRRW 575
S+EV AA + GW G + HW +R RRW
Sbjct: 16 SDEVAAPAALPRRGGWEGHSEDHWQPCRGIQWVRERLRGRRW 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,507,937
Number of Sequences: 37544
Number of extensions: 524321
Number of successful extensions: 1576
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -