Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D08
(662 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 357 2e-98
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 357 2e-98
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 357 2e-98
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 357 2e-98
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 298 1e-80
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 119 8e-27
AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for t... 31 2.8
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 357 bits (878), Expect = 2e-98
Identities = 162/207 (78%), Positives = 182/207 (87%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
GRKKGAKLT EE I+NKKRS+K KKY R++ +K+ LEEQF G+LLAC+ASRPGQ
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQ 181
Query: 559 CGRADGYILEGKELEFYLRKIKSKRAK 639
CGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 182 CGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 357 bits (878), Expect = 2e-98
Identities = 162/207 (78%), Positives = 182/207 (87%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
GRKKGAKLT EE I+NKKRS+K KKY R++ +K+ LEEQF G+LLAC+ASRPGQ
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQ 181
Query: 559 CGRADGYILEGKELEFYLRKIKSKRAK 639
CGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 182 CGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 357 bits (878), Expect = 2e-98
Identities = 162/207 (78%), Positives = 182/207 (87%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
GRKKGAKLT EE I+NKKRS+K KKY R++ +K+ LEEQF G+LLAC+ASRPGQ
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQ 181
Query: 559 CGRADGYILEGKELEFYLRKIKSKRAK 639
CGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 182 CGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 357 bits (878), Expect = 2e-98
Identities = 162/207 (78%), Positives = 182/207 (87%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 62 VGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 121
Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
GRKKGAKLT EE I+NKKRS+K KKY R++ +K+ LEEQF G+LLAC+ASRPGQ
Sbjct: 122 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQ 181
Query: 559 CGRADGYILEGKELEFYLRKIKSKRAK 639
CGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 182 CGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 298 bits (731), Expect = 1e-80
Identities = 146/207 (70%), Positives = 165/207 (79%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG---------- 51
Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPL
Sbjct: 52 ---------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPL 101
Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
GRKKGAKLT EE I+NKKRS+K KKY R++ +K+ LEEQF G+LLAC+ASRPGQ
Sbjct: 102 GRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQ 161
Query: 559 CGRADGYILEGKELEFYLRKIKSKRAK 639
CGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 162 CGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 119 bits (287), Expect = 8e-27
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +1
Query: 400 LTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGY 579
LT EE I+NKKRS+K KKY R++ +K+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 580 ILEGKELEFYLRKIKSKRAK 639
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for type
III collagen protein.
Length = 354
Score = 31.5 bits (68), Expect = 2.8
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 4 RRPRWGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 177
+R R+ +SRDH H A R ++KK+K EL T + RI ++ SR N K
Sbjct: 40 KRCRFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,251,891
Number of Sequences: 237096
Number of extensions: 2869823
Number of successful extensions: 6089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6089
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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