Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D08
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 306 1e-83
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 34 0.078
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 34 0.078
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.24
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.24
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.24
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.24
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.24
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.24
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 0.96
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 0.96
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 29 2.9
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 29 2.9
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 29 2.9
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 5.1
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 28 5.1
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical p... 28 6.8
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 6.8
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 28 6.8
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 28 6.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 306 bits (751), Expect = 1e-83
Identities = 142/207 (68%), Positives = 170/207 (82%)
Frame = +1
Query: 19 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 198
GISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRLD
Sbjct: 2 GISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLD 61
Query: 199 TGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPL 378
+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL
Sbjct: 62 SGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPL 121
Query: 379 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQ 558
RKK AKL+E + AI+NKKRS T KKY RQ+ + V+ L EQF+TGRLLA ++S PGQ
Sbjct: 122 ARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQ 181
Query: 559 CGRADGYILEGKELEFYLRKIKSKRAK 639
G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 182 VGQANGYILEGKELDFYLRKIRAKKAK 208
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.078
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +1
Query: 241 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 411
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 412 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 528
++AI ++ + KK L + + SK E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.078
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +1
Query: 241 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 411
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 412 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 528
++AI ++ + KK L + + SK E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 184 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 184 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 184 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 184 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 184 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 184 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 288
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 520 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 434
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 520 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 434
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 137 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 21
W S V +GRPN +++G P A+L C S++I
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 421
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 137 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 21
W S V +GRPN +++G P A+L C S++I
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 421
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 137 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 21
W S V +GRPN +++G P A+L C S++I
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 330
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 382 RKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 507
+K G A++ I K+++ KTAKKY +++L+++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -3
Query: 654 ILHISLCPLGFDLP*VEL--QLFTFQNVTI 571
I +SLCPLG+DL V L LF FQ +I
Sbjct: 12 ISSVSLCPLGYDLLYVHLLTTLFHFQATSI 41
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 598 ALYLPKCNHRRDRTDRADSPHMLTAVQCGIAPPDHPLP 485
+L + + H D TDR TA+ G+ PDH P
Sbjct: 164 SLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 201
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 598 ALYLPKCNHRRDRTDRADSPHMLTAVQCGIAPPDHPLP 485
+L + + H D TDR TA+ G+ PDH P
Sbjct: 166 SLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 203
>Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical
protein C39E9.11 protein.
Length = 405
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 385 KKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 507
KK K + EE +K+ +K AKK + +++ K+ GG+++
Sbjct: 79 KKALKKAQKEE----RKKEKKLAKKAMKVEKIPKIGGGIQK 115
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 226 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 348
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 598 ALYLPKCNHRRDRTDRADSPHMLTAVQCGIAPPDHPLP 485
+L + + H D TDR TA+ G+ PDH P
Sbjct: 166 SLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 203
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 417 FLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 286
FL LG LP V I RC HHD + +Y G+G +
Sbjct: 2 FLFPLVLGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,967,804
Number of Sequences: 27780
Number of extensions: 389022
Number of successful extensions: 1071
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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