Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D07
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   2.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   2.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   3.5  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    24   8.0  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    24   8.0  

>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 12  LIFMCTRHINPHYKYNLIKKSFFSI 86
           LIF CT  +  HY+ +L   +FFS+
Sbjct: 83  LIFCCTLRMIEHYEKSLSNINFFSL 107


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 282 PTKGRRHRHASRTLPLGSSASALPTGSFVRSVRCGHVDACLNTTTLPIIIVFLYL 118
           P +  R    +   PL  S +         +V+ G  + C   TTL ++ + LYL
Sbjct: 44  PQQSYRSNSFNELPPLSRSVTFAENEQPNEAVKLGTFEGCFIPTTLNVLSILLYL 98


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 273 GRRHRHASRTLPLGSSASALPTG 205
           G RHR ++ +L +GSS S   +G
Sbjct: 255 GHRHRRSTGSLSVGSSGSGFSSG 277


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 162 GRRPHVRIVRI--ARNYPSAMPMPTIRAVAFAMRADDVY 272
           G +P+  ++ +  A   P+AMP+P + +V      DD Y
Sbjct: 60  GIKPNATLLMMGTAGELPTAMPIPAVESVEQEESEDDGY 98


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 PTKGRRHRHASRTLPLGSSASALP 211
           PT    H HAS  L LGS++   P
Sbjct: 231 PTVSSNHIHASGNLALGSNSGLNP 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,415,643
Number of Sequences: 5004
Number of extensions: 22781
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)