Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D07
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical...    27   5.3  

>Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical
          protein K07A1.17 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 13 LFLCVLDTLIHITNI 57
          L LC+LDTL+HI +I
Sbjct: 49 LLLCILDTLVHIASI 63


>AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical
           protein Y111B2A.24 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 264 HRHASRTLPLGSSASALPTGSFVRSV 187
           HR A   LPLG  +  LPT +F RSV
Sbjct: 329 HRGALLDLPLGFVSIPLPTPNFSRSV 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,379
Number of Sequences: 27780
Number of extensions: 127219
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)