Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D06
(231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 24 2.3
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 24 3.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 23 4.1
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 23 4.1
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 23 5.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 23 5.4
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 23 7.2
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 22 9.5
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 22 9.5
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 22 9.5
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 22 9.5
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 126 IQPSRCHSKHRI*GFILNTIF*R 58
I P RC ++R+ G I NT+F R
Sbjct: 569 IGPVRCTLQNRVTGEICNTVFSR 591
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 23.8 bits (49), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 34 NIAKTVVPPLKNCVQNEALNTVLRMTPAGLN 126
N+AK VV KN Q E + VLR GL+
Sbjct: 347 NLAKGVVDWRKNSDQLEVITDVLRDHQVGLS 377
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 25 HLKNIAKTVVPPLKNCVQNEALNTVLRMTPAGLNI 129
+L+N + PLK VQ N R+TP + +
Sbjct: 571 NLQNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRV 605
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 91 LGLHFEHNFLEVGPPFWR 38
+ +FEHNFL P +R
Sbjct: 146 ISCYFEHNFLNASVPSYR 163
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 145 ASHEIPEKLRDIPTSANPKF 204
AS+ +P+ ++ PT +NP F
Sbjct: 201 ASNNVPDFNQNYPTESNPMF 220
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 145 ASHEIPEKLRDIPTSANPKFF-HMVE 219
+SH IP IPTS+ FF H E
Sbjct: 371 SSHTIPSAGASIPTSSLKSFFEHAAE 396
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 7 GSIEMLHLKNIAKTVVPPLKNCV 75
GS+ ++ LKNI +V PL+ V
Sbjct: 11 GSLTLVKLKNILLYIVCPLETIV 33
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 67 NCVQNEALNTVLRMTPAGLNICC 135
N +Q + + V + P LN+CC
Sbjct: 475 NLLQLKFTDDVRNVCPLNLNVCC 497
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 79 NEALNTVLRMTPAGLNIC 132
+E LNT+ + AGL +C
Sbjct: 189 DERLNTIDNLRKAGLKVC 206
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 33 EYRQNGGPTSKKL 71
+Y++ GGPTS K+
Sbjct: 215 KYKRRGGPTSPKI 227
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = -1
Query: 213 HVEKFRVCTGRYVSKLFRDLMACISTATNIQPSR 112
H+ R+C ++ + R + A T P+R
Sbjct: 124 HIHNRRLCWAEFIYCIRRGIKAIFKTTVQFLPTR 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,033
Number of Sequences: 5004
Number of extensions: 20233
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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