Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D06
         (231 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK098607-1|BAC05351.1|  158|Homo sapiens protein ( Homo sapiens ...    28   4.6  
BC141860-1|AAI41861.1|  739|Homo sapiens TMC1 protein protein.         28   6.1  
BC114380-1|AAI14381.1|  740|Homo sapiens TMC1 protein protein.         28   6.1  
BC103956-1|AAI03957.1|  727|Homo sapiens TMC1 protein protein.         28   6.1  
AL591662-1|CAH72029.1|  760|Homo sapiens transmembrane channel-l...    28   6.1  
AL590662-1|CAI15164.1|  760|Homo sapiens transmembrane channel-l...    28   6.1  
AL162416-1|CAH72129.1|  760|Homo sapiens transmembrane channel-l...    28   6.1  
AF417578-1|AAL86399.1|  760|Homo sapiens transmembrane channel-l...    28   6.1  

>AK098607-1|BAC05351.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25741 fis, clone TST05901. ).
          Length = 158

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 85  KNRRFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 121


>BC141860-1|AAI41861.1|  739|Homo sapiens TMC1 protein protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 637 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 673


>BC114380-1|AAI14381.1|  740|Homo sapiens TMC1 protein protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 637 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 673


>BC103956-1|AAI03957.1|  727|Homo sapiens TMC1 protein protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 637 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 673


>AL591662-1|CAH72029.1|  760|Homo sapiens transmembrane channel-like
           1 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 670 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 706


>AL590662-1|CAI15164.1|  760|Homo sapiens transmembrane channel-like
           1 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 670 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 706


>AL162416-1|CAH72129.1|  760|Homo sapiens transmembrane channel-like
           1 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 670 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 706


>AF417578-1|AAL86399.1|  760|Homo sapiens transmembrane channel-like
           protein 1 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 206 KNLGFALVGMSLSFSGISWLA*VRQQIFNPAGVILSTV 93
           KN  F ++G +L     SW+A + +Q+ NP G++++ +
Sbjct: 670 KNRMFEVIGETLEHDFPSWMAKILRQLSNP-GLVIAVI 706


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,963,133
Number of Sequences: 237096
Number of extensions: 746753
Number of successful extensions: 1101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 76,859,062
effective HSP length: 55
effective length of database: 63,818,782
effective search space used: 1340194422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)