Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D06
(231 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein. 27 1.8
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 27 1.8
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 27 1.8
U00046-10|AAC47049.3| 958|Caenorhabditis elegans Hypothetical p... 26 3.1
U97552-6|AAX55683.1| 216|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 25 5.5
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ... 25 5.5
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 25 7.2
U53150-2|AAV28350.1| 580|Caenorhabditis elegans Hypothetical pr... 25 9.5
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 55 PPLKNCVQNEALNTVLRMTPAGLNICCRTYASHEIPEKLRDIPTSANPK 201
PP K V+ A+ +T A ++ RT S E L + PTSA+P+
Sbjct: 622 PPTKTNVEKPAVRLGRMLTTAFGSMSYRTRKSVENKTDLLNQPTSASPR 670
>Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein.
Length = 722
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 55 PPLKNCVQNEALNTVLRMTPAGLNICCRTYASHEIPEKLRDIPTSANPK 201
PP K V+ A+ +T A ++ RT S E L + PTSA+P+
Sbjct: 622 PPTKTNVEKPAVRLGRMLTTAFGSMSYRTRKSVENKTDLLNQPTSASPR 670
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 55 PPLKNCVQNEALNTVLRMTPAGLNICCRTYASHEIPEKLRDIPTSANPK 201
PP K V+ A+ +T A ++ RT S E L + PTSA+P+
Sbjct: 622 PPTKTNVEKPAVRLGRMLTTAFGSMSYRTRKSVENKTDLLNQPTSASPR 670
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 55 PPLKNCVQNEALNTVLRMTPAGLNICCRTYASHEIPEKLRDIPTSANPK 201
PP K V+ A+ +T A ++ RT S E L + PTSA+P+
Sbjct: 622 PPTKTNVEKPAVRLGRMLTTAFGSMSYRTRKSVENKTDLLNQPTSASPR 670
>U00046-10|AAC47049.3| 958|Caenorhabditis elegans Hypothetical
protein R13F6.10 protein.
Length = 958
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 121 LNICCRTYASHEIPEKLRDIP 183
L CCR Y S IP KL P
Sbjct: 716 LEYCCREYPSFLIPSKLAQSP 736
>U97552-6|AAX55683.1| 216|Caenorhabditis elegans Hypothetical
protein W05H7.4c protein.
Length = 216
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 160 PEKLRDIPTSANPKFFHMVEYFF 228
P D P S +P FF++ ++FF
Sbjct: 156 PHHFSDSPISCSPCFFYVSDFFF 178
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 189 TGRYVSKLFRDLMACISTATNIQPSRCHSKHRI*GFILNTIF*RWDH 49
TG V+++F D++AC + C H +LN I R+ +
Sbjct: 45 TGDTVTRVFEDVLACEDDSRRHVEDNCQLMHLNEATLLNNIRLRYQN 91
>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform b protein.
Length = 1144
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 189 TGRYVSKLFRDLMACISTATNIQPSRCHSKHRI*GFILNTIF*RWDH 49
TG V+++F D++AC + C H +LN I R+ +
Sbjct: 45 TGDTVTRVFEDVLACEDDSRRHVEDNCQLMHLNEATLLNNIRLRYQN 91
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 82 EALNTVLRMTPAGLNICCRTYASHEIP 162
+AL + RM P G CC T H++P
Sbjct: 800 QALLNMYRM-PLGCQRCCTTIDDHQLP 825
>U53150-2|AAV28350.1| 580|Caenorhabditis elegans Hypothetical
protein F20A1.4 protein.
Length = 580
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 40 AKTVVPPLKNCVQNEALNTVLRMTPAGLNICCRTY 144
AKT++P + CV N N + M + + TY
Sbjct: 180 AKTIIPSVTLCVLNLLQNICIMMVALSILLIRNTY 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,106,063
Number of Sequences: 27780
Number of extensions: 117325
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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