Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D03
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...   114   7e-27
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   3.4  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    26   4.4  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   4.4  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   5.9  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   7.7  

>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score =  114 bits (275), Expect = 7e-27
 Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = +3

Query: 264 SRKPKTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQLPV-QSKLGPWIASRRTEEVKKK 440
           S K  TA+VM+NMGGP  +D+VG +L R+ TD D+I L   Q+ LG +IA RRT +V+  
Sbjct: 28  SGKGPTAVVMMNMGGPSNLDEVGPFLERLFTDGDIIPLGYFQNSLGKFIAKRRTPKVQNH 87

Query: 441 YMEIGGGSPILKWTNSQGTLLAEALDQMLPESAPHKHYVAFR 566
           Y +IGGGSPIL WT  QG+ + + LD+  PESAPH  +VAFR
Sbjct: 88  YSDIGGGSPILHWTRIQGSEMCKILDKKCPESAPHLPFVAFR 129


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 258 PDSRKPKTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQLPVQ 386
           P+   P  +++M+      T + VGG   +I   +++I+LPV+
Sbjct: 124 PNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVK 166


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 107 YLIVITIQNNSDTIHNLW-STK*ISKQH 27
           Y   IT+   S+TI +LW STK   K H
Sbjct: 221 YAFTITVTEYSETIPSLWPSTKEFIKMH 248


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 398 AEFTLDRQLDHVSICHNTMQITTYLINSFRTTHVQHNYSS 279
           + FT  ++  ++S+       T+YLIN+ +   +++N SS
Sbjct: 148 SSFTQPKENPNISVLETLPDSTSYLINTSQNYSLRNNVSS 187


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 469 IGEPPPISIYFFLTSSVLLLAIQGP 395
           +G PP  SIYFFL +    ++ Q P
Sbjct: 540 VGNPPSNSIYFFLFAKDETVSEQAP 564


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 365 VSICHNTMQITTYLINSFRTTHVQHNYSSL 276
           +S CHN      ++INS RT  V +NY  +
Sbjct: 354 ISFCHNCSSRGPFVINSERT--VYNNYQRI 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,709
Number of Sequences: 5004
Number of extensions: 47899
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)