Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_D03
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672... 67 8e-12
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 63 2e-10
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 31 0.48
02_04_0294 - 21658515-21658573,21658642-21659047,21659166-216593... 29 2.6
11_06_0145 - 20615044-20617167,20617444-20618076 27 7.9
08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001... 27 7.9
05_01_0592 + 5332067-5332233,5332326-5332488,5332572-5332642,533... 27 7.9
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 27 7.9
>05_04_0005 +
17063717-17063866,17065737-17065855,17066903-17067218,
17067579-17067722,17067909-17067926,17068853-17068954,
17069358-17069461,17069543-17069669,17069809-17069961,
17070261-17070361,17070538-17070739,17071245-17071469
Length = 586
Score = 67.3 bits (157), Expect = 8e-12
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Frame = +3
Query: 276 KTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQLP-----VQSKLGPWIASRRTEEVKKK 440
K +++LN+GGP+T+D V +L + D D+I+LP +Q L +I+ R + K+
Sbjct: 167 KIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEG 226
Query: 441 YMEIGGGSPILKWTNSQ--GTLLAEALDQML-PESAPHKHYVAFR 566
Y IGGGSP+ + T++Q G +AEAL + L + P K YV R
Sbjct: 227 YASIGGGSPLRQITDAQIIGVNMAEALRKALCDKDIPAKVYVGMR 271
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Frame = +3
Query: 276 KTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQLP-----VQSKLGPWIASRRTEEVKKK 440
K +++LN+GGP+T+D V +L + D D+I+LP +Q L I++ R + K+
Sbjct: 714 KVGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFRFLQRPLAKLISTFRAPKSKEG 773
Query: 441 YMEIGGGSPILKWTNSQGTLLAEAL 515
Y IGGGSP+ K T+ Q L AL
Sbjct: 774 YASIGGGSPLRKITDEQANALKVAL 798
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 120 IVSKLPNRYHNTKQLGHNPQFVEYEINFKTTFLF 19
I+ KL +R HN + L H PQ +Y I +T +F
Sbjct: 280 IIVKLADRLHNMRTLTHMPQHKQYAIAMETLQVF 313
>02_04_0294 -
21658515-21658573,21658642-21659047,21659166-21659307,
21659411-21659626,21659735-21659830,21660180-21660295,
21660501-21660604,21660970-21661067,21661167-21661272,
21661386-21661473
Length = 476
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 454 PISIYFFLTSSVLLLAIQGPSLLWTGNWIMSRSV 353
P+ ++FFL SSVL + + W N +++ +V
Sbjct: 220 PLDVFFFLASSVLPRELSDARIAWIQNCLLTTAV 253
>11_06_0145 - 20615044-20617167,20617444-20618076
Length = 918
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 74 DTIHNLWSTK*ISKQHSFSYFVPR 3
D+IH++W+ + + K + YFV R
Sbjct: 713 DSIHSMWNVQHVEKAYLHGYFVDR 736
>08_02_0505 +
17897038-17898870,17899049-17899108,17900034-17900150,
17900352-17900389,17900446-17900641
Length = 747
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 390 YSGQATGSCLDLS*YDADNHLPDQQF 313
Y+G ATG S Y AD ++PD F
Sbjct: 179 YAGAATGGSGSFSAYAADTNVPDSTF 204
>05_01_0592 +
5332067-5332233,5332326-5332488,5332572-5332642,
5333311-5333420,5333457-5333528,5333599-5333634,
5333635-5334071
Length = 351
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -2
Query: 437 LLDFFGPSTCYPGAEFTLDRQLDHVSICHNTMQITTYLINSFRTTHVQHNYSSLRF 270
LL G CY T + +IC+ + T +L +FR + N S L++
Sbjct: 277 LLAMIGALVCYARRSITKLFAMIGATICYGILLATLFLCTTFRRSTSWRNMSMLKW 332
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 318 VDQVGGYLHRIMTDRDMIQLPVQSKLGPWIASRRTEEVKKKYMEIGGGSPILKWTNSQGT 497
+ + YL + + + LP +L + ++ E++K + + G+P+ +++ +
Sbjct: 199 LQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTS 258
Query: 498 LLAEALDQMLPES--APHKHYVA 560
L +ALD + ++ AP K VA
Sbjct: 259 LFEDALDAGVADNSDAPGKDMVA 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,901
Number of Sequences: 37544
Number of extensions: 300948
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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