Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D03
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   2.3  
AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical ...    29   3.1  

>Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical
           protein Y49E10.1 protein.
          Length = 416

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +3

Query: 207 GFSVPMQRTAIAAYSKAPDSRKPKTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQLPVQ 386
           G  V ++  + A +   P+   P  +++M+      T + VGG   +I   +++I+LPV+
Sbjct: 121 GARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVK 180


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 137  CADYIIYLLSNCTLRQNVSNKMSRIFRTNAEDSNSSL**STRFKETED 280
            CA Y  ++LSN T RQ VSN++  I++   + +   +  S R   T+D
Sbjct: 1521 CASY--WILSNKTTRQWVSNRVETIYQVKEKFATDGITSSFRHCPTKD 1566


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 137  CADYIIYLLSNCTLRQNVSNKMSRIFRTNAEDSNSSL**STRFKETED 280
            CA Y  ++LSN T RQ VSN++  I++   + +   +  S R   T+D
Sbjct: 1521 CASY--WILSNKTTRQWVSNRVETIYQVKEKFATDGITSSFRHCPTKD 1566


>AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical
           protein F56F11.4a protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 195 TRCRGFSVPMQRTAIAAYSKAPDSRKPKTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQ 374
           T   G  V ++    A +   P    P  +++M+      T + VGG   +I   +++I+
Sbjct: 112 TLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIE 171

Query: 375 LPVQ 386
           LPV+
Sbjct: 172 LPVK 175


>AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical
           protein F56F11.4b protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 195 TRCRGFSVPMQRTAIAAYSKAPDSRKPKTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQ 374
           T   G  V ++    A +   P    P  +++M+      T + VGG   +I   +++I+
Sbjct: 133 TLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIE 192

Query: 375 LPVQ 386
           LPV+
Sbjct: 193 LPVK 196


>AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical
           protein F37C4.6 protein.
          Length = 544

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/78 (24%), Positives = 31/78 (39%)
 Frame = +3

Query: 234 AIAAYSKAPDSRKPKTAIVMLNMGGPKTVDQVGGYLHRIMTDRDMIQLPVQSKLGPWIAS 413
           A+  Y     SR+P   + + +      VD   G++  + T       P   K G W   
Sbjct: 385 AVMDYKNGRYSRRPVIEMTIPSSVDRTIVDSADGHVVLLFTQ----YTPFSPKDGEWTEE 440

Query: 414 RRTEEVKKKYMEIGGGSP 467
           ++TE  K  + EI   +P
Sbjct: 441 KKTEYAKHVFSEIDAYAP 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,337,211
Number of Sequences: 27780
Number of extensions: 275205
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)