Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D02
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   2.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   2.0  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.5  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   6.1  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    24   8.0  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 135 NTSKSSRCTMHAAGASRARAPSCSSWYRPRADSCSPGDPL 16
           +TS SS+ T H   AS   + +  S+ +P+ +  +  DP+
Sbjct: 470 STSPSSKITKHLKDASSTYSINPPSYNKPKVERNTTADPI 509


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 135 NTSKSSRCTMHAAGASRARAPSCSSWYRPRADSCSPGDPL 16
           +TS SS+ T H   AS   + +  S+ +P+ +  +  DP+
Sbjct: 470 STSPSSKITKHLKDASSTYSINPPSYNKPKVERNTTADPI 509


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 275 PLTRYNIMGDRTCRSTYVC 331
           PL   +++ +RTC S+Y+C
Sbjct: 339 PLAPMDVLTERTCLSSYLC 357


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 187 EKIKHVYVANGRDARRPTVTDS 252
           + +K  Y+++  DAR P+V+DS
Sbjct: 145 DTLKKTYLSSENDARYPSVSDS 166


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 VLCFYKRFVICIPDYSINMK 190
           V+  YKRFVI  PD++  +K
Sbjct: 189 VISGYKRFVIISPDHANQLK 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,253
Number of Sequences: 5004
Number of extensions: 31777
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)