Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D02
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    30   0.63 
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737...    28   2.5  
06_03_1091 - 27540163-27540377,27540662-27540819,27540849-27540973     28   3.3  
06_03_0544 - 21980180-21980277,21980427-21980646,21980802-219808...    27   7.7  
01_05_0686 - 24277812-24277909,24278029-24278081,24278227-242783...    27   7.7  

>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 129 SKSSRCTMHAAGAS-RARAPSCSSWYRPRADSCSPGDP 19
           S+  R  + A G+S RA A S  SW    A S +PGDP
Sbjct: 271 SQMWRAAVAAVGSSPRASAASARSWPEMAAPSSAPGDP 308


>07_03_0543 +
           19272389-19272534,19273337-19273496,19273584-19273741,
           19273852-19273945,19274082-19274198,19275119-19275229,
           19275309-19275396,19275615-19275718,19275796-19275867,
           19275950-19276039,19276151-19276308,19276746-19276752,
           19277140-19277194,19277273-19277421,19277543-19277664,
           19277916-19278105
          Length = 606

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 294 LWEIGHAAVHTCAVASTFCGYVVSYK*TFL----YIFSKKKK 407
           LW +GH A    AV +  C  +VSY   FL    ++F KK K
Sbjct: 187 LWSVGHKADKLAAVRTKNCFDIVSYM-IFLCGGTFVFPKKPK 227


>06_03_1091 - 27540163-27540377,27540662-27540819,27540849-27540973
          Length = 165

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 315 AVHTCAVASTFCGYVVSYK*TFLYI 389
           A  TCAVAS   GY+V +K  FLYI
Sbjct: 50  ASDTCAVASAASGYMV-FKSLFLYI 73


>06_03_0544 -
           21980180-21980277,21980427-21980646,21980802-21980860,
           21981043-21981058
          Length = 130

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 355 MWFPINKRFCTYFQKKKKK 411
           MW P++  FC Y +KKK +
Sbjct: 111 MWHPLSGGFCGYKRKKKNR 129


>01_05_0686 -
           24277812-24277909,24278029-24278081,24278227-24278309,
           24278353-24278401,24278466-24278514,24279455-24280418
          Length = 431

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 126 KSSRCTMHAAGASRARAPSCSSWYRPRADSC 34
           K+S+ +   +GAS A AP CS   +P   SC
Sbjct: 98  KASKESSKDSGASAAAAPECSECQQPIKLSC 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,637
Number of Sequences: 37544
Number of extensions: 231468
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)