Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D02
         (412 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL353671-6|CAH71256.1|  195|Homo sapiens tigger transposable ele...    29   4.5  
AL031847-8|CAI19444.2|  634|Homo sapiens ring finger protein 207...    29   4.5  
AK098413-1|BAC05300.1|  195|Homo sapiens  subunit.  protein.           29   4.5  

>AL353671-6|CAH71256.1|  195|Homo sapiens tigger transposable
           element derived 1-like 2 protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 123 SSRCTMHAAGASRARAP--SCSSWYRPRADSCSPG 25
           S+   ++A+G  R   P  SCSSW RP++   +PG
Sbjct: 20  STADVLNASGPRRQWHPLASCSSWSRPQSQGSTPG 54


>AL031847-8|CAI19444.2|  634|Homo sapiens ring finger protein 207
           protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 53  RYQLEQEGARARDAPAACIVHRLDLLVLCFYKRFVICI 166
           R+ +   G R+RD P  C +H    L+    K+ ++CI
Sbjct: 139 RHDIVALGQRSRDVPQKCTLHAEPYLLFSTDKKLLLCI 176


>AK098413-1|BAC05300.1|  195|Homo sapiens  subunit.  protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 123 SSRCTMHAAGASRARAP--SCSSWYRPRADSCSPG 25
           S+   ++A+G  R   P  SCSSW RP++   +PG
Sbjct: 20  STADVLNASGPRRQWHPLASCSSWSRPQSQGSTPG 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,127,019
Number of Sequences: 237096
Number of extensions: 1220841
Number of successful extensions: 9454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9454
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)