Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D02
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    26   9.2  
AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine r...    26   9.2  

>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 261 PSVTVGHRRATRIASVSDVHMFNFFIFIE*SGI--QITNLL*KHNTSKS 121
           PS+ V H+   ++  V D   FNF  F     I   +T L  K  TS +
Sbjct: 333 PSMIVSHKEYQKLKLVKDSKYFNFLFFQIFGSILPSLTTLFDKQKTSNN 381


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 267 DSDHSLGITLWEIGHAAVHTCAVASTFCGYVVSY 368
           D D +    L +   ++V TC + S  CG+V++Y
Sbjct: 210 DLDRAYSFMLSDSMTSSVWTCFLLSCICGFVLNY 243


>AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine
           receptor, class x protein21 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 240 RRATRIASVSDVHMFNFFIFIE*SGIQITNLL*KHNTSKSSRCTMHAAGASRAR 79
           RR T+I   SD  + N  + +      + NLL  +    +SR  + AAG+S ++
Sbjct: 161 RRCTKITWYSDFMLNNSLVMVT----LVFNLLTAYKAGTTSRSMLQAAGSSMSK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,860,136
Number of Sequences: 27780
Number of extensions: 191557
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)