Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D02
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.14 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 111 TMHAAGASRARAPSCSSWYRPRA 43
           T++A GA   R P+ +SW+ P A
Sbjct: 139 TLYALGAKIIRTPTEASWHSPEA 161



 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 52 ASCRFLQPGGS 20
          A C FL PGGS
Sbjct: 66 AKCEFLNPGGS 76


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 291 LYRVSGRCRSPSVTVGHRRATRIASVSDVHMF 196
           L R+SG     SVT G R  T +A + D+H +
Sbjct: 140 LVRLSG---DGSVTYGMRFTTTLACMMDLHYY 168


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 402 FFLKICTETFIYRKPHN 352
           FF ++ T+T  YR  +N
Sbjct: 248 FFTRVVTDTIKYRNDNN 264


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 49 SCRFLQPGGSTSLD 8
          S  F +PGG  SLD
Sbjct: 14 SAHFARPGGDYSLD 27


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 82 ARSLLLQLVPASCRFLQPGGSTSLDA 5
          A ++L +    SC++L  GG+ +  A
Sbjct: 19 ASTILSESAGTSCKWLSEGGNDTRSA 44


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 316 AACPISHNVIPSEWSLSVAV 257
           A+ P+  + +PS++ LSV +
Sbjct: 692 ASSPLEPSAVPSKFCLSVTL 711


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,722
Number of Sequences: 438
Number of extensions: 2410
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)