Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_D01
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   1.1  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    28   1.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.5  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   8.1  
SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...    25   8.1  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   8.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   8.1  

>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +1

Query: 169 LDDESDPLDAIKAREQAXXXXXXXXXXXXXXXXXPEIKPTKGSIAPVRKGIKETQNVKSQ 348
           LD ES+ L  +K +EQ                  P ++     + P ++ + +T+N+KS 
Sbjct: 181 LDLESEDLMRLKKQEQLDDEIAKKYLLGQQEAEEPLVQQQTSIVNPEKEEVTKTENIKSL 240

Query: 349 ENK 357
           E +
Sbjct: 241 EGE 243


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 41  KCRLTKVRDNNPITSSFCVIKSSRGSQWRI 130
           KCR     DNN +   FCV   S GSQ ++
Sbjct: 2   KCRALYSHDNNILIFGFCVQIMSAGSQTKL 31


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 283 PTKGSIAPVRKGIKETQNVKSQENKTGEQQKSKGL 387
           PTK S +P+ K  KET      EN++ E +    L
Sbjct: 474 PTKSSASPLVKAPKETPERLCTENQSTENEDQANL 508


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 478 VGRPPRREFNDRRPNFERRNFNDNPEGAERRGPR 579
           + R  +R F D+   FER  F   PEG+ R  P+
Sbjct: 38  IERSSQRAFKDKE--FERLGFPMVPEGSWRHAPK 69


>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 413 SVHLRAVVRNGRKTAPLRTRTVLGDRLDVSSMIAGLTSSAAISTIIRKVPSVGD 574
           ++H+R   RNGRKT  L T   L    D   ++  L    A +  I K   +G+
Sbjct: 26  NIHIRIQQRNGRKT--LTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGE 77


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 192 KRIGLVVQKKSISVIHSHTVGILHCDPLDDLITQKLDVIG 73
           K +  + Q  S++V HS    I++CD L+ L+   + + G
Sbjct: 150 KGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITG 189


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 460 IENKDGVGRPPRREFNDRRPNFERRNFNDNPEGAERRGPR 579
           ++ K+   RP  R FN      E   F  NP    +RGPR
Sbjct: 378 LKRKNSATRPQARLFN------ESEAFKSNPSKFSKRGPR 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,464
Number of Sequences: 5004
Number of extensions: 34052
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)