Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C24
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    29   0.60 
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    27   2.4  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   3.2  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   5.6  

>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 192 RIFINCVLPKNHNFFL 239
           RI+I CVLP+NH  +L
Sbjct: 253 RIYITCVLPRNHYIYL 268


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 250 MLFSITTKIIER*PYTKNLMPDY 318
           +LFS+ T I+E  P  +N++P Y
Sbjct: 270 LLFSLATLIVENNPKKENIIPKY 292


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 64  ILKQDSDSRHYFQYTFHTCSSFTFLQDIYIVRVNALQLMK 183
           +LK DS+ RHY      +  S +  +  Y+V  N ++L K
Sbjct: 235 VLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAK 274


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 292 YTKNLMPDYNSSLLFLNILK 351
           Y  NL P +NSS+LF +I K
Sbjct: 155 YYTNLTPVFNSSILFSSITK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,129
Number of Sequences: 5004
Number of extensions: 47808
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)