Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C24
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0596 + 4435643-4436664,4437241-4437766                           31   0.61 
04_04_0427 + 25137036-25137119,25137687-25137826,25139775-251398...    29   3.3  
08_01_0175 - 1497700-1498459,1498546-1499939                           27   7.5  
08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220           27   7.5  
06_01_0937 + 7227290-7227387,7227459-7227508,7227628-7227818           27   7.5  

>01_01_0596 + 4435643-4436664,4437241-4437766
          Length = 515

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 300 FCIRLSFYYFCCYRKKHDLYLKKNCGFLV 214
           F + +S+Y   CYR K  L LK NC + +
Sbjct: 269 FALFVSYYSSVCYRAKDHLNLKSNCVYFI 297


>04_04_0427 +
           25137036-25137119,25137687-25137826,25139775-25139846,
           25141160-25141470,25141595-25141705,25143548-25143640,
           25144063-25144212,25145062-25145120,25145636-25145693,
           25146351-25146622
          Length = 449

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 300 FCIRLSFYYFCCYR-KKHDLYLKKN 229
           FC+ L FYY C YR +   +YLK++
Sbjct: 415 FCLPLQFYYCCPYRVRLASVYLKQS 439


>08_01_0175 - 1497700-1498459,1498546-1499939
          Length = 717

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 362 THFSFKMFKNNNDEL*SGMRFFVYGYLS 279
           T FSF +   N D    GM FF+ GY S
Sbjct: 91  TRFSFNITPTNLDNKGDGMAFFLVGYPS 118


>08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220
          Length = 629

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 362 THFSFKMFKNNNDEL*SGMRFFVYGYLS 279
           T FSF +   N D    GM FF+ GY S
Sbjct: 101 TRFSFNITPTNLDNKGDGMAFFLVGYPS 128


>06_01_0937 + 7227290-7227387,7227459-7227508,7227628-7227818
          Length = 112

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 424 PRVYHIFQHRSQNILSE 374
           PR YH+  HR QN++S+
Sbjct: 89  PRKYHLIPHRYQNLISQ 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,446
Number of Sequences: 37544
Number of extensions: 233891
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)