Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C23
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   169   2e-43
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   168   6e-43
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   6.2  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   8.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   8.3  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    25   8.3  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  169 bits (412), Expect = 2e-43
 Identities = 86/162 (53%), Positives = 101/162 (62%)
 Frame = +2

Query: 20  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 199
           MSKVS   +   V  +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP
Sbjct: 1   MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60

Query: 200 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 379
            M +CILGD    D AK   V  M                           SE LIKQIP
Sbjct: 61  NMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120

Query: 380 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVV 505
           RLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKV+
Sbjct: 121 RLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVL 162



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = +3

Query: 456 KLMKSREPSNSK*RRWLCRSVAVGHVDMTPDELAQNVHLSINFLV 590
           K+++ +     + ++ LC  VAVGHVDM  ++LA N+ L+INFLV
Sbjct: 146 KIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLV 190


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  168 bits (408), Expect = 6e-43
 Identities = 86/162 (53%), Positives = 102/162 (62%)
 Frame = +2

Query: 20  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 199
           MSKVS  ++   V  +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP
Sbjct: 1   MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60

Query: 200 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 379
            M +CILGD    D AK   V  M                           SE LIKQIP
Sbjct: 61  NMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120

Query: 380 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVV 505
           RLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKV+
Sbjct: 121 RLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVL 162



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +3

Query: 495 RRWLCRSVAVGHVDMTPDELAQNVHLSINFLV 590
           ++ LC  VAVGHV+M+ ++L  N+ L++NFLV
Sbjct: 159 KKVLCLGVAVGHVEMSEEQLIANIMLAVNFLV 190


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 540 SCRRDRRPQTGTTTFFIWNLMVPLTSSIF 454
           SC  +    +  TT+F WN    L+SS+F
Sbjct: 339 SCSINSASMSSNTTYFYWNSTSSLSSSVF 367


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 35  RDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRF 163
           ++ L++ V      SKE  ++   T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 53   CVNAVIQSSKEKKRKFLETVELQIGLKNYD-PQKDKRFSG 169
            C N +++SS   K  F +TV +     +YD P+ D  + G
Sbjct: 939  CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 502 HLLHLEFDGSLDFINFLC 449
           HL     DG LDFIN +C
Sbjct: 609 HLASEGLDGELDFINVIC 626


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 59  NAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 205
           +A IQ + E+K  FL ++     + N D  KD+        KY+  P++
Sbjct: 170 DAPIQINHEQKEDFLVSIPRPTPMTNLDDGKDEIGQPDPHRKYMAPPRV 218


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 123 ICSSTVSKNLRFFSFEDWMTAL 58
           IC S  +  L F + EDW+ AL
Sbjct: 900 ICESMKNVKLDFVTLEDWLKAL 921


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 413 KFPGLLSHQESMTQKIDEVKGTIKFQMKKVVVPVCGRR 526
           +FP  ++  E++++ ID++  T +   KKV +   G+R
Sbjct: 16  RFPVAVNLNETLSELIDDLLETTEISEKKVKLFYAGKR 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,505
Number of Sequences: 5004
Number of extensions: 37671
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)