Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C22
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 191 4e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 190 7e-49
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 175 2e-44
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 1.2
02_03_0371 - 18267986-18268378 29 2.1
05_06_0220 - 26498678-26499018,26500010-26500115,26500206-265005... 29 3.6
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 191 bits (465), Expect = 4e-49
Identities = 100/189 (52%), Positives = 128/189 (67%), Gaps = 7/189 (3%)
Frame = +2
Query: 23 VGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 199
+GID + ++K +RT +S+DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 200 PISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARI 361
P+S+ RL R M K P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 362 LAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 541
+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG +
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Query: 542 HARPSRRSN 568
+ R N
Sbjct: 181 FEKARGRRN 189
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 190 bits (463), Expect = 7e-49
Identities = 98/183 (53%), Positives = 123/183 (67%), Gaps = 1/183 (0%)
Frame = +2
Query: 23 VGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 199
+GID + ++K +RT +S DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 200 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 379
P+SL RLA+ M+ E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 380 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 559
LTFDQLALRAP G TVL++G +NAREAVRHFG APG P SHTKPYVR+KG + +
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARG 179
Query: 560 RSN 568
R N
Sbjct: 180 RRN 182
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 175 bits (427), Expect = 2e-44
Identities = 100/200 (50%), Positives = 125/200 (62%), Gaps = 18/200 (9%)
Frame = +2
Query: 23 VGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 199
+GID + ++K +RT KS DV T + FN +ILRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 200 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 379
P+SL RL R M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 380 ILTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFGPAPGAPRSH 508
LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P S+
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSN 178
Query: 509 TKPYVRTKGHEHARPSRRSN 568
TKPYVR+KG + + R N
Sbjct: 179 TKPYVRSKGRKFEKARGRRN 198
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 328 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 167
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>02_03_0371 - 18267986-18268378
Length = 130
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 14 RHEVGIDINHKHDRKVRRTEVKSQDV 91
R E G+++NH+ D ++R E +QDV
Sbjct: 41 RREHGVEVNHRGDEEIRVPEGPNQDV 66
>05_06_0220 -
26498678-26499018,26500010-26500115,26500206-26500550,
26500659-26501030
Length = 387
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 5 CRIRHEVGIDINHKHDRKVRRTEVKSQ 85
CR + V + I+HK DRK R +++Q
Sbjct: 226 CRGKEPVALSIDHKPDRKDERARIEAQ 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,145
Number of Sequences: 37544
Number of extensions: 361491
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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