Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C20
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    59   2e-10
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    42   5e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    39   3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    33   0.014
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    33   0.019
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    30   0.18 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    29   0.31 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   0.71 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    27   0.93 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    27   1.2  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   2.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.0  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   6.6  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    24   8.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   8.7  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +1

Query: 223 PHNRTKCQSRRSIAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAE-DQRYK 399
           P N       ++  F  DF+ GG+SAAVSKTA APIERVKLL+Q Q    +      RYK
Sbjct: 13  PVNANTITETKNSTFFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYK 72

Query: 400 GIVDAFVR 423
           GI + F R
Sbjct: 73  GIGECFKR 80


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 16/28 (57%), Positives = 26/28 (92%)
 Frame = +1

Query: 280 LAGGISAAVSKTAVAPIERVKLLLQVQH 363
           L+GG++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQN 52


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 223 PHNRTKCQSRRSIAF-AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS 369
           P++  +   + S  F  K  +AGG +  V+K+ VAP++RVK+L Q  H S
Sbjct: 2   PNSTAQYPEKDSWEFLVKSGIAGGTAGCVAKSVVAPLDRVKILYQTNHAS 51


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.5 bits (73), Expect = 0.014
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +1

Query: 277 FLAGGISAAVSKTAVAPIERVKLLL 351
           F++GGI+  VS+T  AP++R+K++L
Sbjct: 131 FISGGIAGIVSRTCTAPLDRLKVML 155



 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +1

Query: 277 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 372
           +LAGG++ +V++  + P++ +K  +Q   +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +1

Query: 280 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVD 411
           ++GG+S A++ +   P++ VK LLQ +  S  I E ++ KG +D
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLD 251


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 226 HNRTKCQSRRSIAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQR-YKG 402
           HN T+ +    ++    FL+GG++A  + T   P E +K   Q+Q    ++   +R YK 
Sbjct: 13  HNPTQVKKLGPVS---GFLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKS 69

Query: 403 IVDAF 417
           +  AF
Sbjct: 70  VGQAF 74


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 280 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 369
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 271 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 360
           KD +AGG +   S   VAP++ VK   Q Q
Sbjct: 7   KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 262 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQ 360
           +F KDFLA G+S  V++  V  P + VK+ LQ Q
Sbjct: 16  SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48



 Score = 27.5 bits (58), Expect = 0.93
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 FLAGGISAAVSKTAVAPIERVKLLLQVQ 360
           +++G IS   +   V P+E V++ LQ+Q
Sbjct: 116 YVSGAISGLANSFLVGPVEHVRIRLQIQ 143


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 277 FLAGGISAAVSKTAVAPIERVKLLLQ 354
           F+AGG++  +   A AP++ VK  LQ
Sbjct: 52  FIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 59  IDRISKKAHTYP*CSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPPKEDHI 229
           + R+S+K       +C H       + NR +   GFS      SF VR+   +E  I
Sbjct: 232 LKRLSRKFRFLK-VTCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNGEEQKI 287


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 4   CRNSARGAAPPCRTARERDRSNFKK 78
           CR +   A   C T RE ++ N KK
Sbjct: 395 CRRNLLWAESSCETIREENQKNIKK 419


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 389 WSSAICLLTCW 357
           W+  ICL++CW
Sbjct: 141 WAPGICLISCW 151


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 19/66 (28%), Positives = 25/66 (37%)
 Frame = +1

Query: 7   RNSARGAAPPCRTARERDRSNFKKGTHLPLVLL*SRNNSKSPD*KSGVRFSWFFHSVCAE 186
           R S+ G     +  +++   N  KG  LP       NN      K    F WF  S C  
Sbjct: 297 RQSSMGGKVSAKK-KQKQNLNITKGLPLP-------NNGACEHYKKS--FRWFRFSCCDR 346

Query: 187 VLPCPQ 204
           V PC +
Sbjct: 347 VYPCDE 352


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 182 PKSFLVRKYPPKEDHIIEQNVNLADPSRSPK 274
           P+SF V+K P  + H +   +   DP    K
Sbjct: 449 PESFKVQKVPTPKGHCVACRITSEDPGEGFK 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,155
Number of Sequences: 5004
Number of extensions: 37116
Number of successful extensions: 111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)