Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C20
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   101   5e-24
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   101   5e-24
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  101 bits (241), Expect = 5e-24
 Identities = 45/56 (80%), Positives = 54/56 (96%)
 Frame = +1

Query: 259 IAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRI 426
           +AFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D FVRI
Sbjct: 8   VAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRI 63


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  101 bits (241), Expect = 5e-24
 Identities = 45/56 (80%), Positives = 54/56 (96%)
 Frame = +1

Query: 259 IAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRI 426
           +AFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D FVRI
Sbjct: 8   VAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRI 63


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = +2

Query: 197 VRKYPPKEDHIIEQNVNLADPSRSPKTFWLAV 292
           V++  P +++ + ++  + + +R P   WL+V
Sbjct: 136 VQRIKPYDEYYVWRDARIVNGTRQPPNNWLSV 167


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 380 AICLLTCWT 354
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 380 AICLLTCWT 354
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 107 DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 214
           D  ++P   I+NR  +  G S P   +     K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 180 THGMEKPRKTNPRFLIRRFGVIS 112
           THG   P       LIR  G +S
Sbjct: 55  THGKGTPTVVKTNILIRSMGPVS 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,345
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)