Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C19
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    68   7e-13
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   0.86 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.5  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   1.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   2.6  
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    25   3.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   6.1  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   6.1  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   8.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 67.7 bits (158), Expect = 7e-13
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +3

Query: 267 INEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKC 410
           I EKL+ PY+ +   YYDLG+  RD T+DQ+T+DAA AILK++VGIKC
Sbjct: 36  IREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKC 83



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +2

Query: 194 KRVLATNPIVEMDGDEMTRIIW 259
           +++   NP+VEMDGDEMTR+IW
Sbjct: 12  QKITVKNPVVEMDGDEMTRVIW 33


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 80   RVELFIKCHVKMVGRNAKKLLKYVSELTPIHSRNY 184
            +V L     ++ V  N   + + VS L P+HSR Y
Sbjct: 1047 KVILISISRLRQVDENTNSIKRIVSRLQPLHSRQY 1081


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 147 YFNNFFAFLPTIFTWHFIKSSTLLNVSATISTCQISAQ 34
           Y NN+++  P+ FT       +L +V + + TC  SA+
Sbjct: 634 YLNNWYSVKPSSFTKGLNNKPSLEDVFSNLETCYESAK 671


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 126 FLPTIFTWHFIKSSTLLNVSATISTCQISAQVAPPMYTMTS 4
           F+ TI+   F+KS+ + +V +T+  C   AQ +  +Y   S
Sbjct: 429 FISTIYILPFLKSTIVSSVQSTLQVC--GAQTSDRLYISKS 467


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -2

Query: 374 SRVNRHLIVSSVTVRQTQIIVKAVQLNIRENKLFINS 264
           S VN++  +SS  +++ Q+ V+A    I+ +++F+N+
Sbjct: 394 SLVNKNYEISSGKLKERQVAVRARIEGIKAHEMFLNN 430


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  YKVPRKNGRKERKKVVKICERTYTYSFKK 180
           Y  PR+NG  ++ +VV    RT    F+K
Sbjct: 4   YNPPRRNGNSKKNEVVITGGRTQRIDFEK 32


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 128 AKKLLKYVSELTPIHSRNY---GTAKRVLATNPIVEMDGDEMT 247
           AK +++Y++ +  +            +VLATNPI+E  G+  T
Sbjct: 169 AKYIMRYLTSVQGVDHNGVVKRSVENQVLATNPIMEAFGNAKT 211


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 271 LIRSPNYAGHLISIHFNNWISSQN 200
           L+  P Y G+  ++  +NW+ S N
Sbjct: 199 LVWGPEYNGYPTALQIHNWLRSTN 222


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 155 RSHILTTFLRSFRP 114
           +SH +TTFLR F P
Sbjct: 220 KSHSITTFLRDFYP 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,573
Number of Sequences: 5004
Number of extensions: 34221
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)