Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C19
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 75 2e-14
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 75 2e-14
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 73 7e-14
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 57 5e-09
11_01_0623 - 4998236-4999606 30 0.83
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 28 3.3
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 27 5.8
05_07_0120 + 27827059-27827814 27 5.8
03_05_1072 + 30148360-30148833,30148959-30149036,30149156-301492... 27 5.8
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 27 7.7
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 74.9 bits (176), Expect = 2e-14
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +3
Query: 255 FGLRINEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKC 410
F I +KLIFP+++LD Y+DLGLP+RD TDD+VT++AA A LK+NV IKC
Sbjct: 24 FWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAEATLKYNVAIKC 75
Score = 40.7 bits (91), Expect = 4e-04
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 197 RVLATNPIVEMDGDEMTRIIWATN**KAYFP 289
++ NPIVEMDGDEMTR+ W + K FP
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFP 35
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 255 FGLRINEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKC 410
F I +KLIFP++ LD YYDLG+ HRDATDD+VT++AA A LK+NV IKC
Sbjct: 24 FWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAEATLKYNVAIKC 75
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 194 KRVLATNPIVEMDGDEMTRIIWATN**KAYFP 289
+++ NPIVEMDGDEMTRI W + K FP
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFP 35
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 73.3 bits (172), Expect = 7e-14
Identities = 32/48 (66%), Positives = 40/48 (83%)
Frame = +3
Query: 267 INEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKC 410
I +KLIFP++ LD YYDLGLP+RDAT D+VTI++A A LK+NV IKC
Sbjct: 53 IKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAIKC 100
Score = 25.4 bits (53), Expect(2) = 2.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 218 IVEMDGDEMTRIIWATN**KAYFP 289
+ GDEMTR+IW K FP
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFP 60
Score = 21.4 bits (43), Expect(2) = 2.4
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2
Query: 194 KRVLATNPIVEMD 232
++++ NP+VEMD
Sbjct: 4 EKIVVANPVVEMD 16
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 57.2 bits (132), Expect = 5e-09
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +3
Query: 264 RINEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAIL 386
R N+ LIFPY++LD Y+DLGL +RDATDD+VT+++A A L
Sbjct: 96 RGNDDLIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATL 136
>11_01_0623 - 4998236-4999606
Length = 456
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 306 CLYYDLGLPHRDATDDQVTIDAAHAILKHNVGI 404
C YYD G+ H +DD V + A A+ VG+
Sbjct: 22 CYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGV 54
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 410 TFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 282
+F AD++F Y V RHL + + +T+ V ++ + E+
Sbjct: 919 SFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEED 961
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 410 TFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 282
+F D+MF Y V +HL S+ + +T+ +K +++ + E+
Sbjct: 291 SFVTDVMFPYARDNVRKHL-TSTYSSDETKEDIKLLRIQVEED 332
>05_07_0120 + 27827059-27827814
Length = 251
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 135 FFAFLPTIFTWHFIKSSTLLNVSATISTCQISAQVAPPMYTM 10
F F PT + +K TL ++SA + A + P Y+M
Sbjct: 81 FTVFAPTDGAFSSLKPGTLNSLSAQDQVSLVQAHIVPKFYSM 122
>03_05_1072 +
30148360-30148833,30148959-30149036,30149156-30149255,
30149371-30149501,30149604-30149855
Length = 344
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 246 VISSPSISTIGLVAKTLFAVP*FLE*IGVSSLTYFNNFFAFLPTIFTWHFIK 91
V+ S + IG+ + +VP FLE G ++F F A TI IK
Sbjct: 160 VVRCQSFTLIGVAGSLVGSVPCFLEGCGAVVRSFFVQFRALTQTIDQAEIIK 211
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 161 TPIHSRNYGTAKRVLATNPIVEM 229
TP+ SR Y T KR L T +V++
Sbjct: 418 TPVVSRTYSTNKRPLPTTEVVKL 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,037
Number of Sequences: 37544
Number of extensions: 204743
Number of successful extensions: 424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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