Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_C19
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...    75   2e-14
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    32   0.14 
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    32   0.14 
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        32   0.14 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    27   5.3  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   5.3  
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    27   7.0  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    27   7.0  

>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +3

Query: 267 INEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKC 410
           I  KLI PY+ LD  YYDLGL +RD T+DQVTIDAAHAIL+H+VGIKC
Sbjct: 49  IKNKLILPYLDLDIKYYDLGLEYRDETNDQVTIDAAHAILEHSVGIKC 96



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
 Frame = +2

Query: 137 LLKYVSELTPIHSRNYGTA-----KRVLATNPIVEMDGDEMTRIIW 259
           +L  ++    + +RN  TA     +++   NP+V++DGDEMTRIIW
Sbjct: 1   MLSRLTSRNVLLARNVATAATQERQKIKVDNPVVDLDGDEMTRIIW 46


>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +3

Query: 267 INEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKC 410
           I EKLI PYV L+  ++DLG+ HRDATDDQVTIDAA+A LK+NV +KC
Sbjct: 27  IKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDAANATLKYNVAVKC 74



 Score = 31.9 bits (69), Expect = 0.19
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 218 IVEMDGDEMTRIIW 259
           IVEM GDEMTRIIW
Sbjct: 11  IVEMQGDEMTRIIW 24


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +2

Query: 125 NAKKLLKYVSELTPIHSRNYGTAK---RVLATNPIVEMDGDEMT 247
           +AK +++Y++ +    +RN GT     RVLA+NPI+E  G+  T
Sbjct: 213 SAKFVMRYLASVAASKTRNGGTTSIEARVLASNPIMESIGNAKT 256


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +2

Query: 125 NAKKLLKYVSELTPIHSRNYGTAK---RVLATNPIVEMDGDEMT 247
           +AK +++Y++ +    +RN GT     RVLA+NPI+E  G+  T
Sbjct: 213 SAKFVMRYLASVAASKTRNGGTTSIEARVLASNPIMESIGNAKT 256


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +2

Query: 125 NAKKLLKYVSELTPIHSRNYGTAK---RVLATNPIVEMDGDEMT 247
           +AK +++Y++ +    +RN GT     RVLA+NPI+E  G+  T
Sbjct: 213 SAKFVMRYLASVAASKTRNGGTTSIEARVLASNPIMESIGNAKT 256


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 94  YKVPRKNGRKERKKVVKICERTYTYSFKKLWNSKEG 201
           +K     GRK RKK     E + +  FK + NS+ G
Sbjct: 511 HKANSSRGRKPRKKKENNTEESESIDFKNILNSETG 546


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 94  YKVPRKNGRKERKKVVKICERTYTYSFKKLWNSKEG 201
           +K     GRK RKK     E + +  FK + NS+ G
Sbjct: 482 HKANSSRGRKPRKKKENNTEESESIDFKNILNSETG 517


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 94  YKVPRKNGRKERKKVVKICERTYTYSFKKLWNSKEG 201
           +K     GRK RKK     E + +  FK + NS+ G
Sbjct: 511 HKANSSRGRKPRKKKENNTEESESIDFKNILNSETG 546


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 404 DADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 282
           D  ++F+Y  S  +RHL +S+    +  +++  + +NI  N
Sbjct: 101 DGHLLFKYWKSVEHRHLNLSTKRASRLHLVLNGLHVNIYNN 141


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 234 PSISTIGLVAKTLFAVP*FLE*IGVSSLTYFNNFFAFLPTI 112
           PSI  + LV +  F +  + E  GV  L YFN+F   LPT+
Sbjct: 244 PSICFVPLVVQ--FFLTQYSE-AGVLILEYFNSFLVILPTL 281


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  CALIWHVEIVALTFNRVELFIKCHVKMVGRNAKKLLKYV 151
           CA +WH   V +T     LF     +   RNA+K LK +
Sbjct: 699 CATMWHETGVEMTCMLKSLFRMDEDQCARRNAQKYLKVI 737


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  CALIWHVEIVALTFNRVELFIKCHVKMVGRNAKKLLKYV 151
           CA +WH   V +T     LF     +   RNA+K LK +
Sbjct: 699 CATMWHETGVEMTCMLKSLFRMDEDQCARRNAQKYLKVI 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,400,039
Number of Sequences: 27780
Number of extensions: 188732
Number of successful extensions: 473
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)