Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C18
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 320 1e-88
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 320 1e-88
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 320 1e-88
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 121 1e-28
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 121 1e-28
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 80 3e-16
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.53
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 3.8
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.8
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 5.0
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 5.0
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.0
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 6.6
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 8.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 320 bits (786), Expect = 1e-88
Identities = 146/201 (72%), Positives = 173/201 (86%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+
Sbjct: 105 GTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQ 162
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 371 GKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 551 ITTEVKSVEMHHEALQEAVPG 613
+TTEVKSVEMHHE+L +PG
Sbjct: 283 VTTEVKSVEMHHESLDAGLPG 303
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 320 bits (785), Expect = 1e-88
Identities = 145/201 (72%), Positives = 173/201 (86%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+
Sbjct: 105 GTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQ 162
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 371 GKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 551 ITTEVKSVEMHHEALQEAVPG 613
+TTEVKSVEMHHE+L +PG
Sbjct: 283 VTTEVKSVEMHHESLDAGLPG 303
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 320 bits (785), Expect = 1e-88
Identities = 145/201 (72%), Positives = 173/201 (86%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+
Sbjct: 105 GTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQ 162
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 371 GKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAG 282
Query: 551 ITTEVKSVEMHHEALQEAVPG 613
+TTEVKSVEMHHE+L +PG
Sbjct: 283 VTTEVKSVEMHHESLDAGLPG 303
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 121 bits (291), Expect = 1e-28
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Frame = +2
Query: 8 AGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 187
AG S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +S
Sbjct: 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WS 331
Query: 188 ESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWLVERKE 358
E RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK-------- 383
Query: 359 GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVF 538
G L+ ALD ++PP +P K LRL + DVY+ TV GRVE G ++ V+
Sbjct: 384 ----GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYD 438
Query: 539 APANITTEVKSV 574
+ VK+V
Sbjct: 439 VSSQEDAYVKNV 450
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 121 bits (291), Expect = 1e-28
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 4/192 (2%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE
Sbjct: 336 GASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 395
Query: 191 SRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWLVERKE 358
R++E ++S +++++ GYN V ++P+S + G N+ + S+ PW+
Sbjct: 396 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWY--------- 446
Query: 359 GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVF 538
+G L+E LD++ R + +P+ YK +GT+ G++E G +K + V+
Sbjct: 447 ---QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLV 501
Query: 539 APANITTEVKSV 574
P N T EV ++
Sbjct: 502 MPINQTLEVTAI 513
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 79.8 bits (188), Expect = 3e-16
Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 4/205 (1%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
G + D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 136 GAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM-LEPSTKMPWFKGWLVERKEGKA 367
E+++ +S Y G+ GDN + + + +G E + G
Sbjct: 189 LVEMEMRELLSEY-----------------GFDGDNTPIVSGSALCALEGR--EPEIGLN 229
Query: 368 EGKCLIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVF 538
L+EA+D+ + P R TD + ++DV+ I G GTV GRVE G LK G +V
Sbjct: 230 SITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVG 289
Query: 539 APANITTEVKSVEMHHEALQEAVPG 613
+++ T V +EM + L AV G
Sbjct: 290 YGSHLKTTVTGIEMFKKQLDAAVAG 314
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 603 ASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSC 448
ASC S + + +SVV+ + +T TV + VST TGTV +P +C
Sbjct: 75 ASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 168 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 269
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
G + D A+L++A QT EH + +K +I+ NK+D +E
Sbjct: 128 GAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHIIILQNKVDLIRESAAE 181
Query: 191 SRFEEIKKEVSSYI 232
++ I K + +
Sbjct: 182 EHYQSILKFIKGTV 195
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 460 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 293
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 576 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 460
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 213 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 362
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 161 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 331
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 170 TEPPYSESRFEEIKKEVSSYIKK 238
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 212 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 337
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 225 EETSFLISSNRDSLYGGSVESILFTPTISCLTPSVKASRACSRVCPFFEIPAS-NSPVPA 49
E + + ISSN S S FT + S TP++ S + V + +S +SP+ +
Sbjct: 757 ETSGYTISSN-SSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISS 815
Query: 48 ATISTAQS 25
+++++ S
Sbjct: 816 NSVTSSTS 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,060
Number of Sequences: 5004
Number of extensions: 58393
Number of successful extensions: 239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -