Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_C18
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 352 1e-97
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 352 1e-97
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 271 2e-75
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 127 7e-30
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 127 7e-30
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 116 1e-26
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 89 2e-18
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 61 7e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 61 7e-10
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 59 2e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 59 2e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 59 2e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 33 0.12
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.21
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.28
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.65
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.86
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.86
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 30 1.1
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 4.6
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 4.6
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 8.1
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 8.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 352 bits (866), Expect = 1e-97
Identities = 165/201 (82%), Positives = 179/201 (89%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSE 164
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A
Sbjct: 165 ARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNAS 224
Query: 371 GKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N
Sbjct: 225 GKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQN 284
Query: 551 ITTEVKSVEMHHEALQEAVPG 613
+TTEVKSVEMHHE+L EAVPG
Sbjct: 285 VTTEVKSVEMHHESLPEAVPG 305
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 352 bits (866), Expect = 1e-97
Identities = 165/201 (82%), Positives = 179/201 (89%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSE 164
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A
Sbjct: 165 ARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNAS 224
Query: 371 GKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N
Sbjct: 225 GKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQN 284
Query: 551 ITTEVKSVEMHHEALQEAVPG 613
+TTEVKSVEMHHE+L EAVPG
Sbjct: 285 VTTEVKSVEMHHESLPEAVPG 305
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 271 bits (665), Expect(2) = 2e-75
Identities = 124/158 (78%), Positives = 138/158 (87%)
Frame = +2
Query: 140 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 319
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 320 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 499
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 500 ETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPG 613
ETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPG
Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPG 271
Score = 29.1 bits (62), Expect(2) = 2e-75
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 11 GTSQADCAVLIVA 49
GTSQADCAVL+VA
Sbjct: 105 GTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 127 bits (306), Expect = 7e-30
Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 2/185 (1%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+
Sbjct: 268 GTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQ 325
Query: 191 SRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 367
RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 326 DRFDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------ 370
Query: 368 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAP 544
+G CL+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 430
Query: 545 ANITT 559
T
Sbjct: 431 VTAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 127 bits (306), Expect = 7e-30
Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 2/185 (1%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+
Sbjct: 286 GTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQ 343
Query: 191 SRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 367
RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+
Sbjct: 344 DRFDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------ 388
Query: 368 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETG-ILKPGTVVVFAP 544
+G CL+E +D+ + P P+D LR+ + DV K+ V G++E+G + K V + +
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 448
Query: 545 ANITT 559
T
Sbjct: 449 VTAAT 453
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 116 bits (279), Expect = 1e-26
Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 2/203 (0%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E
Sbjct: 207 GANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEE 266
Query: 191 SRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 367
RF+EI+ +++ +++K+G+NP + +VP SG G + + T W
Sbjct: 267 ERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY-------- 316
Query: 368 EGKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAP 544
G C IE +D +LP R + +R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 317 SGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMP 374
Query: 545 ANITTEVKSVEMHHEALQEAVPG 613
+V + + V G
Sbjct: 375 NKQPVQVLQIWADDVETERVVAG 397
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 89.4 bits (212), Expect = 2e-18
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S
Sbjct: 105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSS 161
Query: 191 SRFEEIKK 214
R + I++
Sbjct: 162 RRSDTIQR 169
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 204 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 380
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 381 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 479
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 60.9 bits (141), Expect = 7e-10
Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 3/177 (1%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E E
Sbjct: 128 GTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----E 176
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+ ++ E + G+N GD P +G + EG+ +
Sbjct: 177 DDLDLVEMEARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-D 215
Query: 371 GKC---LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVV 532
C LI+ALD++ P R +P+ I G GTV VG +E G+LK G V
Sbjct: 216 ISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKV 272
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 60.9 bits (141), Expect = 7e-10
Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 3/177 (1%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 190
GTSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E E
Sbjct: 128 GTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----E 176
Query: 191 SRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAE 370
+ ++ E + G+N GD P +G + EG+ +
Sbjct: 177 DDLDLVEMEARELLSLHGFN-------------GD-------ATPVIRGSALSALEGQ-D 215
Query: 371 GKC---LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVV 532
C LI+ALD++ P R +P+ I G GTV VG +E G+LK G V
Sbjct: 216 ISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKV 272
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 59.3 bits (137), Expect = 2e-09
Identities = 65/209 (31%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPY 184
G +Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P
Sbjct: 132 GAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPD 182
Query: 185 SESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGK 364
+E+R E ++ ++ + + GY P P+ G + K P + G+
Sbjct: 183 AETR-ELVEMDIREQLNEFGY-PGDTC--PVI--FGSALCALEGKQP---------EIGE 227
Query: 365 AEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVVVF 538
K L+E LD + P R ++ + VY I G GTV G++E GILK G + +
Sbjct: 228 EAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIV 287
Query: 539 APANITTEVKSV----EMHHEALQEAVPG 613
T VKSV E + + +A PG
Sbjct: 288 GGTKDGTTVKSVISGLESFRKTVDQAEPG 316
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 59.3 bits (137), Expect = 2e-09
Identities = 65/209 (31%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPY 184
G +Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P
Sbjct: 133 GAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPD 183
Query: 185 SESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGK 364
+E+R E ++ ++ + + GY P P+ G + K P + G+
Sbjct: 184 AETR-ELVEMDIREQLNEFGY-PGDTC--PVI--FGSALCALEGKQP---------EIGE 228
Query: 365 AEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVVVF 538
K L+E LD + P R ++ + VY I G GTV G++E GILK G + +
Sbjct: 229 EAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIV 288
Query: 539 APANITTEVKSV----EMHHEALQEAVPG 613
T VKSV E + + +A PG
Sbjct: 289 GGTKDGTTVKSVISGLESFRKTVDQAEPG 317
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 59.3 bits (137), Expect = 2e-09
Identities = 65/209 (31%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Frame = +2
Query: 11 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPY 184
G +Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E P
Sbjct: 133 GAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPD 183
Query: 185 SESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGK 364
+E+R E ++ ++ + + GY P P+ G + K P + G+
Sbjct: 184 AETR-ELVEMDIREQLNEFGY-PGDTC--PVI--FGSALCALEGKQP---------EIGE 228
Query: 365 AEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVVVF 538
K L+E LD + P R ++ + VY I G GTV G++E GILK G + +
Sbjct: 229 EAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIV 288
Query: 539 APANITTEVKSV----EMHHEALQEAVPG 613
T VKSV E + + +A PG
Sbjct: 289 GGTKDGTTVKSVISGLESFRKTVDQAEPG 317
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.3 bits (95), Expect = 3e-04
Identities = 53/202 (26%), Positives = 88/202 (43%)
Frame = +2
Query: 8 AGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 187
A ++ D A++I+ + AGI QT EH LLA ++I+ +NK D E
Sbjct: 91 AASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE---- 139
Query: 188 ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 367
+S+ E K+V +K +G + + PI +E S +FK +++
Sbjct: 140 KSKISESAKKVRKGLKSMGVDENS----PI--------VEMSLADGYFKEEMLQNL---- 183
Query: 368 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 547
K IE+ I P R + + + + I G GTV G V G+L+ T + F
Sbjct: 184 --KLAIES--RIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPAL 239
Query: 548 NITTEVKSVEMHHEALQEAVPG 613
N VK++E + + + G
Sbjct: 240 NEKRRVKTLETWKQRVGQVAAG 261
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 401 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 580
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 581 HHEALQEAVPG 613
+ + + G
Sbjct: 210 WKQRVGQVAAG 220
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 159 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTA 31
LF PT+SC+ AS S P PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.28
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Frame = +2
Query: 89 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAF 268
G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V
Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322
Query: 269 VPISGWHGDNMLEPSTKM-PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK--ALR 439
+ N PS K+ P F+ V EG L+ ++P R ++
Sbjct: 323 MDDCVHAAVNF--PSKKVCPIFQ---VSNVEGT--NLPLLRQFLNMVPLRRQLNENDPAH 375
Query: 440 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
+ D+Y + G+GT+ G + +G ++ +++ P +
Sbjct: 376 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.65
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 3/157 (1%)
Frame = +2
Query: 89 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAF 268
G T+EH LA +L V +V V K+D E + I + V S KK+
Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315
Query: 269 VPISGWHGDNMLEPSTKMPWFKGW-LVERKEGKAEGKCLIEALDAILPPARPTDK--ALR 439
PI + D+++ + P K + + + L+ I+P R ++
Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGTNLPLLRQFLNIVPLRRQLNENDPAH 374
Query: 440 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN 550
+ D+Y + G+GT+ G + +G ++ +++ P +
Sbjct: 375 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 609 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 460
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 609 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 460
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -3
Query: 484 YCSNTADFVYVLQGKTESLV-SGASRRKDGVEGLNKAFTFSLSFFTLN-QPSLEPWHFGG 311
Y + + F Y L ++ + A RRKD + +++ F N P L W G
Sbjct: 207 YRTISRQFCYFLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLYFWAVGV 266
Query: 310 RLQHVISVPARNGYESDGSRIV 245
V VP+ N DG+ ++
Sbjct: 267 VTTRVNMVPSENQVGEDGNPVI 288
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 597 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 475
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 606 TASCRASWCISTDLTSVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 457
+ S R S +S D T V + +TVP + VST PT +PPI Y
Sbjct: 49 STSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 597 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 418
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 417 RAG 409
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 597 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 418
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 417 RAG 409
+ G
Sbjct: 273 KEG 275
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 511 PKAWYCCRFCP 543
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 303 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 440
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 481 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 332
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,947
Number of Sequences: 27780
Number of extensions: 332535
Number of successful extensions: 1250
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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